Shewanella litorisediminis: JQC75_02920
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Entry
JQC75_02920 CDS
T07182
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slit03009
]
JQC75_02920 (rlmC)
Enzymes [BR:
slit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
JQC75_02920 (rlmC)
Ribosome biogenesis [BR:
slit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JQC75_02920 (rlmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QRH03556
LinkDB
All DBs
Position
661661..662830
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AA seq
389 aa
AA seq
DB search
MWEPNVSCDYFNRGLCQSCRLMPKPVSEQLLDKEARLTRLLGSLAVDERLAPVSGPEFGF
RNKAKMVVMGAAHAPVLGIPGPDGQPVDLSHCPLYPQDMQALLVELTAFVRRAGIPPYRV
DKAKGELKFILLTRSAVRGEFMLRFVLRSKDAIPRIERELPKLMADFPAIKVVSVNLQPV
HMARLEGEEEIFLTQATRLDEVFNGVPLFIRPKSFFQTNPEVASSLYATAARWVDELKPK
SLWDLFCGVGGFGLHCASHELPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTGFAM
GQEAQDVPEVIIVNPPRRGTGKELCERLSAFGPKAIIYSSCNPETLAEDLALISGYRIAR
VQLFDMFPHSDHFEVLCLLIKEVACANAD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagccgaacgtgagctgtgactatttcaaccggggactttgtcagtcttgccgt
ctgatgcccaagcctgtcagtgagcagttgcttgataaagaggccaggcttacccgactg
cttggcagtctggcggtggacgagcggctggcaccggtatccggtcctgagtttggcttt
cgtaacaaggcaaaaatggtggtcatgggtgctgcccatgctccggtactggggatcccg
gggcccgatggtcaacccgtcgacctcagccattgccccctgtatccacaagacatgcag
gccctgttggttgagctgacggcctttgtccgccgcgcgggtattcctccctatagagtc
gataaggccaagggcgaacttaagtttattttgctgacccgcagtgcagtgcgcggtgag
tttatgctgcgatttgtgctcagaagcaaggatgccattccccgtatcgagcgagaattg
ccgaaattgatggcggacttcccggccatcaaggtggtctcggtgaacctgcagcctgtg
cacatggcaaggctcgaaggcgaagaggaaatctttcttacccaagccacgcgcctcgat
gaagtctttaacggggtgccactctttatccgccccaaaagcttttttcaaaccaatccc
gaggtggcatcgagcctttatgccacggctgcccggtgggtcgatgagctaaagcctaaa
agcctgtgggatctgttctgcggtgtgggtggctttggtttgcactgcgccagccatgag
ctgccggtgacaggaattgaaattgaagccgaagccatcgactgcgccaaaacctcggca
gcggctatggggctggataatttgtcgtttgcggcactggattccaccggctttgccatg
gggcaagaggcgcaagacgtgcccgaggtcatcatagtgaacccaccgcgccgggggact
ggcaaggaactctgtgagcgtttgtcggcctttggcccaaaagccatcatttattccagt
tgcaacccagagacgctggcagaagacctggccctgatttcaggctatcgcatcgcccgg
gtgcagctgtttgatatgttcccccacagcgaccactttgaggtgctgtgtctgcttatc
aaggaagtggcctgcgccaacgcagactga
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