Shewanella litorisediminis: JQC75_06970
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Entry
JQC75_06970 CDS
T07182
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
slit
Shewanella litorisediminis
Pathway
slit01501
beta-Lactam resistance
slit01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JQC75_06970
01503 Cationic antimicrobial peptide (CAMP) resistance
JQC75_06970
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
slit02000
]
JQC75_06970
01504 Antimicrobial resistance genes [BR:
slit01504
]
JQC75_06970
Transporters [BR:
slit02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JQC75_06970
Antimicrobial resistance genes [BR:
slit01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JQC75_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Peptidase_U4
CCSMST1
Motif
Other DBs
NCBI-ProteinID:
QRH03139
LinkDB
All DBs
Position
complement(1598501..1601746)
Genome browser
AA seq
1081 aa
AA seq
DB search
MSIITTSVKRPVTVWMFMLAVILFGMVGFSRLAVMLLPDLSYPTVTIRTLYDGAAPIEVE
QLVSKPIEESVGTVKGLRKISSVSRSGMSDVILEFEWGTDMDMANLDVREKLDIIALPLD
VQKPLLLRFNPNLDPIMRVALSREDANGDELKQLRTYADEELKRQLEGLPGVAAVRLSGG
LEQEVQILLNQERLAQLDLSAEQIRSRIAAENLNVSAGKVVQGDKEYLVRTLNQFNSLEE
LGQVVVYKNGQSLVRLFEVATIIDGHKERSDITRIGQRESIELAIYKEGDANTVTVAKRL
KQDIERINGKDPLAKMEIIYDQSEFIESAVSEVTSSALIGSILAMLVIYLFLRDIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENIDRYKQQGLSRI
DAAVKGTREVSGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFKALPPLLGKEPKAKPEGKMGKLKHYSATVFSFPFVLLFKWLPATLLTLAL
SLSRLLSWLMGMLLKPFTWLFNQGYRALEVTYRPLLAAALKARVLTLMVAIGITACAGVL
LPRLGMELIPNMDQGEFYVEVLLPPGTEVGETDRVLQQLAFSIKDMPAVKHAYSQAGSGG
LMTSDVSRGGENWGRLQVVLADNDAFDQVSDVLRQEIRRVPELEAKVKYPELFSFRTPLE
IELRGYELDLLKQSADSLVRALGQSDRFADINTSLRDGQPELAIHFDSNRLAALGLDAPT
VANRIAQRIGGTVASKYSLRDRKIDILVRAEESERDQISDIGNMIVNPDAATPIPLSAVA
DVKLELGPSAINRISQQRVALVSANLAYGDLAEAVTEARGILAKQQLPASIQASFGGQNE
EMEHSFQSLQIALVLAVFLVYLVMASQFESFLHPLLILFAVPMAVSGSVFGLYLTGTHVS
VVVFIGLIMLAGIVVNNAIVLIDRINQLRSEGIEKLDAISEAAKSRLRPIMMTTMTTVLG
LLPMAMGLGDGAEVRAPMAITVIFGLALSTLLTLVLIPVLYALFDRKDFATQAPDTAEAG
V
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataatcacgacttccgttaaacggccggtcaccgtgtggatgtttatgctcgcg
gtgatcctcttcggtatggtgggtttctcccgtctggcggtcatgttgctgcccgacttg
agctaccccacagtcaccatacgtaccctttacgacggcgctgcccccattgaggtggag
caactggtttccaagcccatcgaagaatctgtgggtaccgtaaaaggcctgcgtaaaatc
agctcagtgtcccgctctggcatgtccgatgtcatcctcgagtttgaatggggtacggac
atggacatggcaaacctcgacgtgagggaaaagctcgacatcatcgccctgccgcttgac
gtacaaaagccgctgctgctgcgctttaaccccaatctcgaccccattatgcgcgtcgcg
ctttcgcgggaagatgccaatggtgatgaactgaagcagctgcgcacctacgccgatgaa
gaactcaagcgtcagctcgaagggctgcccggcgtcgccgcagtgcgtctctccggcggg
cttgaacaggaagtacaaatcctgctgaatcaggagcgtctggcccagcttgatttgagc
gcggagcaaattcgcagccgtatcgccgccgaaaacctgaacgtttcggccggtaaagtg
gttcagggcgataaagagtatctggtgcgcaccctcaaccagttcaactccctggaggaa
ctgggacaggtggtggtgtacaagaacggccagagcctggtgcggctctttgaagtggcc
accatcatcgacgggcacaaagagcgcagcgacatcacccgaatcggccaacgcgagtcc
attgagcttgccatctataaagaaggtgatgccaacacagtgacagtcgccaaacgactg
aagcaggacatagagcgtatcaacggcaaagatccgctcgccaaaatggaaatcatctac
gatcagtccgagttcatcgagagcgcggtgagcgaagtgacgtcctctgcgctgattggc
tctattctggccatgctggtgatttacctgttcctgcgcgacatcattcctacactgatt
atctccatctctatccccttttcggtgatagcgaccttcaacatgatgtatttcgctgac
atcagtctgaacatcatgtcccttggcggtattgctctggccgtgggcctgttggtggat
aatgccatcgtggtgctggaaaatattgacagatacaagcagcagggactgtcgcggata
gacgcggccgtcaagggcaccagggaagtgagcggggcgatttttgcctccaccctcacc
acacttgcagtattcgtccccttggtgttcgtggatggcattgccggagcactcttctct
gaccaggcactcacggtgacctttgctctgcttgcctctttgctggttgccttgacctcc
atccccatgctggcttcccgcgaaggctttaaagccctgccaccactgctgggcaaggag
cccaaagcaaagcctgaaggcaaaatgggcaaactgaagcattacagcgccaccgtgttc
agcttcccctttgtactgcttttcaaatggttacctgccaccttgctgacactggcgcta
tcattaagccgtctgctttcctggctgatgggcatgttgcttaagcctttcacctggtta
tttaaccaaggctaccgcgcactggaagtgacctaccgcccactgcttgctgccgcactc
aaagccagggtactgacccttatggttgccattggtatcactgcctgtgccggagttttg
ctgccacgcctcggcatggagcttattcccaacatggatcagggtgagttttatgtagaa
gtgctgctgcctcccggcaccgaagttggtgaaactgacagagtacttcagcaattagct
ttttccatcaaagacatgcctgcggtaaaacacgcctacagccaagccggcagtggcggt
ttgatgacatcggatgtcagccgcggcggcgaaaactggggccgcttgcaggtggtactt
gccgacaatgacgcctttgaccaggtcagcgatgtcctgcgccaggaaatccgccgcgtt
cccgagctcgaagccaaggtcaagtatcccgaactcttcagcttccgcaccccacttgaa
attgaactgcgtggctatgagctggatctgcttaaacaaagtgccgatagtctggtgcgc
gcactgggtcagtccgatcgtttcgccgacatcaataccagcctgcgggatgggcagccc
gaacttgccattcatttcgacagcaaccgcttggcggcgctggggctggatgctccgaca
gtggccaaccgtatcgcccagcgcattggtggcacagttgccagcaaatacagcctgcgg
gatcgcaagattgatattctggtgcgcgccgaagaaagcgaacgcgaccaaataagcgat
atcggcaacatgattgttaacccggatgccgcgacccctattccgctgtcggcggtagcc
gatgtcaaactggagctgggtccctccgccatcaatcgcatcagccagcagcgtgtagca
ctggtatcggctaacctcgcctatggcgatctggcagaagcagtgactgaagcccgtggc
attttggccaaacagcaattgccagcctccatccaggccagttttggcggacagaacgag
gaaatggaacactccttccagtcgctgcaaatcgcgctggtgctggcggtattcctggtg
tacctggtgatggccagtcagtttgagtctttcctgcatccactgcttatcctctttgcc
gtgcccatggccgtcagtggcagtgtgtttggcctttacctcacggggacacacgtgtca
gtggtggtgtttatcggccttatcatgttggcggggattgtggtgaacaacgccattgtg
ctgattgaccgtattaatcagctgcgcagcgaaggcattgaaaagcttgatgccatcagt
gaagcggccaagtcccgcttgcgccccattatgatgactacaatgaccaccgtgcttggc
ctgttgcccatggccatgggtctgggtgatggcgccgaggtgcgtgcccccatggccatc
acggtgatctttggtctggcactctctaccttgctgaccctggtgctcattcctgtgctt
tatgccctctttgaccgcaaagactttgccacccaggcacccgacactgcggaggccggc
gtatga
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