Spiroplasma litorale: SLITO_v1c01050
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Entry
SLITO_v1c01050 CDS
T04047
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sll
Spiroplasma litorale
Pathway
sll03030
DNA replication
sll03410
Base excision repair
sll03420
Nucleotide excision repair
sll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLITO_v1c01050 (ligA)
03410 Base excision repair
SLITO_v1c01050 (ligA)
03420 Nucleotide excision repair
SLITO_v1c01050 (ligA)
03430 Mismatch repair
SLITO_v1c01050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sll03032
]
SLITO_v1c01050 (ligA)
03400 DNA repair and recombination proteins [BR:
sll03400
]
SLITO_v1c01050 (ligA)
Enzymes [BR:
sll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLITO_v1c01050 (ligA)
DNA replication proteins [BR:
sll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLITO_v1c01050 (ligA)
DNA repair and recombination proteins [BR:
sll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLITO_v1c01050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLITO_v1c01050 (ligA)
MMR (mismatch excision repair)
DNA ligase
SLITO_v1c01050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLITO_v1c01050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
AKX33773
UniProt:
A0A0K1W0T8
LinkDB
All DBs
Position
119430..121433
Genome browser
AA seq
667 aa
AA seq
DB search
MQNIKNKINQIKELLKSWEYAYYVLDDPIVEDSEYDFKLNELKQLELEYPELITADSPTQ
RVGGQISENFEKYNHKFPMLSLDNAFNDNDLYDFDKTIKKETINENYTYFVEPKIDGLSI
SLIYQNGIFIKGVTRGNGIQGEDVTFNIKTIRSLPLSINDKEDYFEVRGEVFLSKKEFQR
INDERKKNNEELFANPRNAAAGTLRQLNSKIVASRKLDVFLYYYLNREKIKTHSDSLDYI
KNIGFKVNPLGKLCKNINEVIKHISYIESVRQDLDYEIDGAVVKVNEFKYYDDIGYTSKF
PKWATAYKYPAEVKITNLKEIFATVGRTGKITYNAILEPVSLAGTTVQAATLHNAEYIFT
KKIRVGANVKVKKAGDIIPEIIEVVNDEIYSNLKTWEKIEQCPACGSDLEIFSDEVDQYC
INFNCERKIIKSLEHFVSRGAMNIEGMSIKIIEKLYENKIINNVTDIYNLKSKKNEILSL
EKTGEKSFSNLINAIEESKKNDASKLLFGLGIRYVGSKTSKLLLDKFKSIQTLMSADITE
IESIHDVGPKVAKSIQDWKKIDSNIILIQKLSELGINMNSLKQIVKENKNIKDKSFVITG
TLSKPRNNFVELIEINGGKVLNSISKITNFLLAGDDAGSKLDKAKDLQVNIINELEFLQM
LEGNNEN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattaaaaataaaataaatcaaataaaagaattgttaaaatcatgagaatat
gcatattatgttttagatgatccaattgttgaagactcagaatacgattttaaattaaat
gagttaaagcaattagagttagaatatccagaacttattaccgctgactctccaactcaa
agagttggtggacaaatttcagaaaactttgaaaaatataatcataaatttcctatgttg
agtttagacaatgcatttaatgataatgatctatatgattttgataaaacaattaaaaaa
gaaacaataaatgaaaactatacgtactttgtagaacctaaaattgatggactatcaata
tctttaatctatcaaaatggaatatttataaaaggtgttactaggggtaatggaattcaa
ggtgaagatgttacatttaatataaaaacaattagaagtttgccgctttcaataaatgat
aaagaagattattttgaagttagaggagaagtttttttatcaaaaaaagagtttcaaaga
ataaatgatgaacgaaaaaaaaataatgaagagttatttgcaaatccaagaaatgctgct
gctggtactttaagacaattaaactctaaaattgttgcttcaagaaagttagatgttttt
ttatattattatttaaatcgtgaaaagattaaaacccattctgactctctagactatata
aaaaatattggttttaaagttaaccctcttgggaaattatgtaaaaatataaatgaagtt
ataaaacatattagttacattgaaagcgtaagacaagatttagattatgaaattgatggt
gcagtagtcaaagtaaatgaatttaaatattatgatgatataggatatacatctaagttt
cctaaatgagcaactgcatataaatacccagcggaagttaaaataacaaacttaaaagaa
atatttgcaacagttggaagaactggaaaaataacttacaacgcaattttagagccagta
agtcttgcgggcacaactgttcaagctgccactttacataatgcagaatatatttttaca
aaaaaaattagagttggtgcaaatgtaaaggtaaaaaaagctggtgacataataccagaa
ataattgaagttgttaatgatgaaatttattcaaatctaaaaacttgagaaaaaattgaa
caatgccctgcttgcggatctgatttagaaatatttagtgatgaagtagatcaatattgc
ataaactttaattgcgaaagaaaaattattaaaagtttggaacattttgtttcaagagga
gcaatgaatattgaaggcatgagtattaaaataattgaaaaattatacgaaaataaaata
attaataatgtaactgatatatataatttaaaatctaaaaaaaatgaaatattaagtctt
gaaaaaactggtgaaaaatcttttagtaatttaataaatgcaattgaagaaagtaaaaaa
aatgatgcaagtaaattattgtttggacttggaatcagatatgtaggaagtaaaacttca
aagttattgttagacaaatttaaaagtatacaaacacttatgtcggcagatatcactgag
attgagtctattcatgacgttggaccaaaggtcgcaaaatcaattcaagattgaaaaaaa
attgacagcaacattattttaattcaaaaactttctgaacttggaataaatatgaactct
ttgaagcaaatagttaaagagaataaaaatattaaagataaaagttttgttataactggt
actttaagtaaacctagaaataattttgtggagttaattgaaattaacggaggaaaagtg
ttaaactcaataagtaaaataactaattttttacttgcgggtgatgatgctggaagcaaa
ttagataaagcaaaagatttgcaagttaatataattaatgaattggagtttttgcaaatg
ttggagggaaataatgaaaattaa
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