Staphylococcus lugdunensis N920143: SLUG_10610
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Entry
SLUG_10610 CDS
T01951
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03030
DNA replication
sln03410
Base excision repair
sln03420
Nucleotide excision repair
sln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLUG_10610 (lig)
03410 Base excision repair
SLUG_10610 (lig)
03420 Nucleotide excision repair
SLUG_10610 (lig)
03430 Mismatch repair
SLUG_10610 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sln03032
]
SLUG_10610 (lig)
03400 DNA repair and recombination proteins [BR:
sln03400
]
SLUG_10610 (lig)
Enzymes [BR:
sln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLUG_10610 (lig)
DNA replication proteins [BR:
sln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLUG_10610 (lig)
DNA repair and recombination proteins [BR:
sln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLUG_10610 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLUG_10610 (lig)
MMR (mismatch excision repair)
DNA ligase
SLUG_10610 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLUG_10610 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Zn_ribbon_NUD
RNA_pol_A_CTD
PTCB-BRCT
HHH
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
CCB53532
LinkDB
All DBs
Position
1114335..1116338
Genome browser
AA seq
667 aa
AA seq
DB search
MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV
RVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIGEVEYMCELKIDGLAVSL
KYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLNFEVRGEAYMPRASFMSLNK
QKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDALDELD
RLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYTQKSP
RWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHER
DIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCGHKLVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHELIKDVADIFYLTEEDLLPLERM
GKKKVENLLQAIDKAKSNSLEHLLFGLGIRHLGAKASYVLAEKYETIERLLTVTEDELIS
IHDIGDKLAQSVVTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTG
KLEQMTRKEAADWLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS
KQTEIME
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggataatttgcaacatcgtgttaatgaattacatgatttattaaatcaatatagttat
gaatattatgttcaggataacccctctgttcctgacagcgaatatgataagcttcttcat
gaattaatccaaattgaagcggatcatcctgagtataaaacgactgattctccaacggtg
cgtgttggcggtgaagcccaatcttcattcgaaaaggttagacatgatacaccaatgctt
agtttaggtaatgcctttaatgaagaggatttaaagcgttttgatcaacgcattcgtgat
cacataggtgaggtagaatatatgtgtgagctgaaaattgacggtttagcagtatcttta
aaatatgaaaacggaaaatttgtgcaaggattgacgcgtggagacggtacgactggagaa
gatattactgaaaatttaagaacgatccatgctatccctttgaaattaaaagagccatta
aacttcgaagtacgtggtgaagcatatatgcctagagcttcatttatgtccttaaataaa
caaaaagagaaaaataacgaacaaccgtttgcaaatccaagaaacgctgctgcaggctcg
ttgcggcaattagattcaaagttggcagctaaacgaaagttaagtgtatttttatatagt
gtcaatgatttctctgattttaatgcaacaactcaaagtgatgctttggatgaactggat
cgcttaggcttcaaaacgaataaagaacgtgagtgtgtgagtgatattgatggtgtattg
gcgtacattgaaaaatggactgcgaaacgtgaatcattagcttatgatattgatggtatc
gtgattaaagttaatgatttagcacaacaagaagagatgggttacacgcaaaaatcgcct
agatgggcaattgcatataaatttcctgctgaagaagtagttacacggctgttagacatt
gaattaagcataggaagaaccggagtagtaacacctacggctattctagaaccagttaaa
gtggccggaaccacagtttcacgtgcatcattgcataatgaagatttaatacatgagcgt
gatattcgcattggagatagtgttgttgtgaaaaaagcaggagacattattccagaagtg
gtaaaaagtattatcgagcggcgccccaatgatgccgaaacgtatcatatgccaacgcat
tgtcctagctgcggacataagttagtaagaattgaaggtgaagtagctttacgctgcatc
aatccaaaatgccaggctcaactggttgaaggacttattcatttcgtatctagacaagct
atgaatattgatggtttaggaacgaaaatcatccagcaactctatcagcatgaattgatt
aaagatgttgcagatattttctatttaactgaagaagatttattacccttagaacgcatg
ggtaaaaagaaagtagagaatctattacaagctatcgacaaagctaaatctaattcttta
gaacatttactttttggtcttggtattcgtcatttaggtgccaaagcaagttatgttttg
gctgaaaaatacgagacgatagaacgtttgttaactgttaccgaagatgaacttataagc
attcatgatattggtgacaaacttgcgcaatctgtcgtcacatacttagaaaatgaagat
attcaatcattgatttctaaattagctaacaaagatgttaatatgacttttaaaggggta
aagatttcagaattagctggtcacccagagtttcaagataaaacaattgtattaacgggc
aaactagaacagatgactcgtaaagaagcggctgattggcttcagttacaaggtgcaaaa
gtgaccaatagtgtaactaaaaacacagatttagttattgcaggtgaagatgcagggtct
aaattaacaaaagcacagaagtttggtactgaaatttggtcagaaagtgactttattagc
aagcaaacggaaataatggagtag
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