Shewanella loihica: Shew_2377
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Entry
Shew_2377 CDS
T00489
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slo
Shewanella loihica
Pathway
slo03030
DNA replication
slo03410
Base excision repair
slo03420
Nucleotide excision repair
slo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew_2377
03410 Base excision repair
Shew_2377
03420 Nucleotide excision repair
Shew_2377
03430 Mismatch repair
Shew_2377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_2377
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_2377
Enzymes [BR:
slo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Shew_2377
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shew_2377
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Shew_2377
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew_2377
MMR (mismatch excision repair)
DNA ligase
Shew_2377
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shew_2377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABO24243
UniProt:
A3QFJ5
LinkDB
All DBs
Position
complement(2779187..2781196)
Genome browser
AA seq
669 aa
AA seq
DB search
MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQ
RVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLPDTPAFCCEPKLDGLAVS
ILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFE
AVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAASHF
EQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQTL
GFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATLHN
ADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERVEG
EAVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLTAS
AITMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHLKQ
ADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQT
WVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDE
AELLAILGS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccatacaagacgagattaaacagttaaccgacgagcttaatcagcacaactat
cgctactatgtcgatgacgcgccctctattcccgacgccgaatatgaccgtctgatgcgt
cgcctgcaggagctggaggccgagcatcccgagctggcgctggccgactcgccaacccag
agagtcggcggcgaggccctgagcaagtttaatcaggtgactcacctcaagcccatgctg
agcctggataacgtcttcagcgaagaggagttcaacgccttctataagcgtgtcggcgat
aagctgccggatacgccagcattttgctgtgagcctaaactcgacggtctggcggtgagt
atcctctatcgcgatggcgtgtttgagcgcgccgccacccgcggcgatggcactgtcggt
gaggacattaccgagaacgtgcgcaccatcaaatctgtgccattgagactcagaggcagc
ggttttccgccactgctagaggtgcgcggcgaagtctttatgcctaaggcagctttcgag
gcggtcaacgataaggcccgcgccaagggcgagaagctcttcgtcaacccgcgtaatgcc
gccgccggtagcctgcgtcagctagacagcaagatcaccgccagtcgctccttggcattc
tatgcctacgctctgggcgtggtggagccagaaacctggccgctggcagccagccatttc
gagcagctggtgcagcttaaagagtggggctgtccggtgagcagtgaagtcaaggtatgt
gcggatatccccagtgtgctggcctattatcaggacatactgacccgtcgtagcgagctg
gcctatgagatagatggcgtggtgcttaaggtgaacgatatcgcccagcagcagactctt
ggtttcgtggctaaggcgcctcgctgggccaccgcctataagtttccggcccaggaggag
atcacccagctcgaaggagttgacttccaggtggggcgtaccggcgccgtgaccccggtt
gcgcgcctgcagcctgtctttgtcggtggggttacggtctccaacgccaccttgcataac
gccgatgagatcgcccgtctcggggtgatgataggcgatagcgtgatcatccgccgcgcc
ggcgatgtgatccctcaggtcgttgccgtggtgcccgagaagcgcccgagtgatgcccag
gcgatccagttcccgccgcaatgccccgtgtgtggcagcgacgtagagcgcgtcgagggt
gaagcggttgcccgttgtaccggcggcctcgtttgtgaggcccagcgtaaggaagcaatc
aagcacttcgcctctcgcaaggcgttagatatcgatggcatgggtgacaaggtggtggag
cagctgatcgataaggagctggtggccagccctgcggatctcttcaagctgaccgcctcg
gcgatcactatgctggatcgcatggggatgaagtcagccactaatttggtcaatgccctg
gaagcggccaagcaaactacctttgcccgtttcctctattcgctggggatcagggaggtg
ggcgaagccaccgccgccaacctagctaactatttcaagactcttgagcatctcaagcag
gcggacgccgagacctttatgaaggttgacgatgtcggggtgatcgtcgcccagcatctg
gtgcacttcttcgagcagccccataaccttgaggtgatcgatggcctgctgcaggccggt
gtgcactggcccgacatcgaagaggttgccgaagaggcgctctccctgaaggggcagacc
tgggtattaaccggcaccctgacgcaactcaatcgcaacgatgccaaggctaagctgcag
gcattaggtgccaaggtggcaggcagcgtctcgaaaaataccgattgcttggttgccgga
gaggccgctggttctaagttgaccaaggcgcaggagcttggagttaaggtgatcgatgag
gcagagctcttggctatcctaggctcttaa
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integrated database retrieval system
