Synoicihabitans lomoniglobus: PXH66_15640
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Entry
PXH66_15640 CDS
T09702
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slom
Synoicihabitans lomoniglobus
Pathway
slom03030
DNA replication
slom03410
Base excision repair
slom03420
Nucleotide excision repair
slom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PXH66_15640 (ligA)
03410 Base excision repair
PXH66_15640 (ligA)
03420 Nucleotide excision repair
PXH66_15640 (ligA)
03430 Mismatch repair
PXH66_15640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slom03032
]
PXH66_15640 (ligA)
03400 DNA repair and recombination proteins [BR:
slom03400
]
PXH66_15640 (ligA)
Enzymes [BR:
slom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PXH66_15640 (ligA)
DNA replication proteins [BR:
slom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PXH66_15640 (ligA)
DNA repair and recombination proteins [BR:
slom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PXH66_15640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PXH66_15640 (ligA)
MMR (mismatch excision repair)
DNA ligase
PXH66_15640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PXH66_15640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
HHH
RecR_HhH
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WED63769
UniProt:
A0AAF0CPA8
LinkDB
All DBs
Position
complement(4049288..4051075)
Genome browser
AA seq
595 aa
AA seq
DB search
MLGWVLGAGAVDDSERIDALRAEIAHHDDLYFRQAAPEITDYEYDLLKIELRRLERAAGL
LVDESPIGDDSSGNSTDRVMHEHPMLSLDKAYSADEVGEFMDRVQEAAGGESVRFAVEPK
FDGVAVSVTLHRGNLMRAATRGDGESGEDVTAQVNAIRGLRYEFGWDVDEVPIETIELRG
EVYLTDAAFAALNRERVANGEAVFRHPRSVAAGAIKLEDLAAVASRTLSIVFHGWGEVSP
AESEPTSVMAFQQWLEARGLPSVRDARFAETRSSVEMESVVHAVRTLAEGYPTDGVVIKV
DDVALQRKLGLAATAPRWALARKFAPPRAETTLTAVVWQVGRTGALTPVAEFRPVSLSGT
VIARASLHNVAEVRRRDLRIGDVVWVEKAGEIIPTIGGVERDRRGPDSRPLRLPSRCPSC
DQPVQGVDELRCENFDCEAQVVQRIEHFASRNALNIRGLGPGTVAKLVDAGLVRSPADLY
ALTVESLESVSGIGAATAAKLWRAIEASRAAPLERVLVGLGLPGVGPAAAQRLAERLASL
DQLADVATNEGLENELGAAGAEALGIALRRPEWRALIRAMAANGVGAGSLRAAAR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgctggggtgggttttgggggcgggagcggttgatgattcggaacggattgatgcattg
cgggcggagatcgctcatcatgatgacctctactttcgccaagctgcgccggagatcacg
gattatgaatacgatctgctgaagatagaattacgtcgtttggaacgtgcagcgggcctg
cttgttgacgagtccccaatcggggatgactcgagtgggaactcgactgaccgggtgatg
catgagcacccgatgctgagtttggacaaggcttactcggcggacgaagtcggcgaattc
atggatcgggtccaagaggctgcgggcggcgaatcggtgcgcttcgccgtcgagcccaag
tttgatggcgtcgccgtgagtgtgactttgcaccggggaaatttaatgcgcgcagccacg
cggggtgacggagagagtggcgaggacgtgaccgcgcaggtgaatgcgatacgcggtttg
cgatacgagtttggttgggacgtcgatgaggtcccgatcgagaccattgaactgcgcggc
gaggtgtatctgacggatgccgcgttcgccgcgttgaatcgcgagcgcgtggcgaacgga
gaggccgtgtttcgtcatccgcggagcgttgccgcaggtgcgatcaaactggaggatctg
gctgcggtcgcgagtcgcacgctttcgattgtttttcacggttggggagaggtttctccc
gccgaatccgagccgacatcggtcatggcgtttcaacagtggctggaggcgcgtgggttg
ccgtcggtgcgtgacgctcgttttgctgaaacgcgttcgtcggttgaaatggaaagcgtg
gtgcacgcggtgaggacactcgcggagggttatccgacggatggcgtggtgatcaaagtc
gacgacgtggcattgcaacggaagttgggtctggcggcgaccgcgccccggtgggcattg
gcgcggaagtttgcgccgccccgggcggagacgaccctgaccgcggtggtttggcaggtc
ggccggacgggggcgctgacgccggtggccgagtttcggccggtatcgttgagtggcact
gtcatcgcgcgagcgtcgttgcataacgtggcggaggtccggcggcgcgatttgcggatt
ggcgatgtggtctgggtcgagaaggcgggtgaaatcattcccacgatcggcggagtggag
cgtgatcgccgggggccggattcccggccgctgcgtttgccatcacgctgcccgagctgt
gaccagccggtgcagggtgtcgatgagttgcgctgcgagaatttcgactgtgaggcgcag
gtcgtgcaacggatcgaacacttcgcttcccgcaacgctttgaacattcgcggactcggt
cccgggacggtggcaaaactggtcgacgcgggcttggtgcggagtccggccgatttgtat
gcgctgacggtggaatcgcttgaatcggtgtcgggaattggtgcagcgacggcggccaaa
ctttggcgtgcaatcgaagccagtcgcgcggcaccgctggagcgcgtgttggtgggcctg
ggtttgcccggggtcggtcccgcggcggcgcaacgcttggcggagcgactagcaagtctt
gatcagttggcggatgtcgcgaccaacgaggggctggaaaacgaacttggggccgccggg
gccgaggcattgggcatcgcgctgcggcgtccggaatggcgcgcgctgatccgggcgatg
gccgcgaacggggtgggcgcgggatctctgcgggcggcggcgcggtga
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