Streptomyces longhuiensis: LGI35_30110
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Entry
LGI35_30110 CDS
T09038
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slon
Streptomyces longhuiensis
Pathway
slon03030
DNA replication
slon03410
Base excision repair
slon03420
Nucleotide excision repair
slon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGI35_30110 (ligA)
03410 Base excision repair
LGI35_30110 (ligA)
03420 Nucleotide excision repair
LGI35_30110 (ligA)
03430 Mismatch repair
LGI35_30110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slon03032
]
LGI35_30110 (ligA)
03400 DNA repair and recombination proteins [BR:
slon03400
]
LGI35_30110 (ligA)
Enzymes [BR:
slon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGI35_30110 (ligA)
DNA replication proteins [BR:
slon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGI35_30110 (ligA)
DNA repair and recombination proteins [BR:
slon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGI35_30110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGI35_30110 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGI35_30110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGI35_30110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UDM02224
LinkDB
All DBs
Position
6509685..6511892
Genome browser
AA seq
735 aa
AA seq
DB search
MAGEQQHAQPAEVPTTAREQHAQLAEQVEEHRFRYYVKDQPVVSDGEFDQLLRSLEALEE
QYPELRTPDSPTQKVAGSYAAVSTSFAAVEHRERMLSLDNAFDDAELAAWADRIARDVGT
PDYHFLCELKIDGLAVNLTYEDGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGDRVP
ALVEIRGEVFFPMASFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVH
GIGAREGFDIDRLSQAYELLHEWGLPTARHNRVVDSIEDVREFIAHFGENRHSIVEHEID
GAVVKLDEIPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVNIRVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQDVVKKKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AECPECGTPLRPMKEGDIDLRCPNARSCPAQLRERLFYLAGRKSLDIENFGYVAAAALTK
PLEPAEPVLADEGDLFDLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEP
RKNALSMLENIAAAKERPLARVITGLSVRHVGPVAAEALAREFRSMDRIEQATEEELAAT
DGVGPIIAASLKQWFAEDWHREILRKWRAAGVRMEEEGAGEDQGPRPLEGLTVVVTGTLE
HNTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLE
QGPDAAADAALPTEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagcacgcacagcccgcagaggtgcccacgacggcacgggagcag
cacgcgcagctcgccgagcaggtcgaggagcaccgcttcaggtactacgtgaaggaccag
ccggtcgtcagcgacggcgagttcgaccagctcctgcgctccctggaggcgctggaggag
cagtaccccgagctgcgcacgcccgactcgccgacgcagaaggtcgcgggttcgtacgcg
gccgtgtccacgtcgttcgccgccgtcgagcaccgcgagcgcatgctctccctcgacaac
gccttcgacgacgccgagttggccgcctgggccgaccgcatcgcccgggacgtcggcacg
cccgactaccacttcctgtgcgaactcaagatcgacggcctcgcggtcaacctcacgtac
gaggacggcaggctcacccgcgccgccacccgcggagacggccgcaccggcgaggacatc
actcccaacgtgcgcacgatcgcggagatcccccaccgcctcaagggcgaccgtgtcccg
gcactcgtcgagatccgcggcgaagtcttcttccccatggcgagcttcgaggaactcaac
gcgcgcctggtggaggccggcgacaagcccttcgccaacccgcgcaacgcggcggcgggt
tcactgcgccagaaggacccccgcgtcaccgcgacccgcccgctccacatggtcgtgcac
ggcatcggcgcccgcgagggcttcgacatcgaccgcctctcccaggcctacgagctgctg
cacgaatggggcctgcccaccgcccggcacaacagggtggtcgacagcatcgaggacgta
cgggagttcatcgcccacttcggggagaaccgccactccatcgtcgagcacgagatcgac
ggcgccgtcgtcaagctcgacgagattcccctccagggccgcctcggctccacgtcgcgc
gccccgcgctgggccatcgcctggaagtacccgccggaggaggtcaacaccaagctggtc
aacatccgcgtcggcgtcggccgcaccggccgcgtcacgccgtacgcacaggtcgagccc
gtgaccgtggccggctccgaggtcgagttcgcgaccctgcacaaccaggacgtcgtcaag
aagaagggcgtcctcatcggggacaccgtcgtcctgcgcaaggcgggcgacgtcatcccg
gagatcctcggcccggtcgccgacctgcgcgacggcagcgagcgggagttcgtgatgccc
gccgagtgtcccgagtgcggcacgccgctgcggcccatgaaggagggcgacatcgacctc
cgctgcccgaacgcccggtcctgcccggcccagttgcgcgagcgcctcttctacctcgcg
ggccgcaagtccctcgacatcgagaacttcggctacgtggcggccgccgccctcaccaag
cccctggagccggccgagccggtgctcgccgacgagggcgatctgttcgacctcaccatc
gagcagctgctgccgatccgggcgtacgtcctcgaccaggacagcggcctgcccaagcgg
gacccgaagaccggcgaggagaagatcgccacggtcttcgccaaccagcagggcgagccc
cgcaagaacgccctgtccatgctggagaacatcgcggcggccaaggagcggccgctcgcg
cgcgtcatcaccggcctgtccgtgcgccatgtggggcccgtcgccgcggaggcgctggcc
cgcgagttccgctccatggaccgcatcgagcaggccaccgaggaggagctcgccgccacc
gacggcgtcgggccgatcatcgcggcctcgctcaagcagtggttcgctgaggactggcac
cgcgagatcctgcgcaagtggcgggccgccggggtgcggatggaggaggagggcgccggc
gaggaccagggaccgcgtcccctcgaaggcctcacggtcgtcgtcaccggcactcttgag
cacaacacccgagatggcgcgaaagaggccctgcagagcagaggggccaaggtgacgggc
tccgtttccaagaagacctccttcgtcgtagtgggggacaacccgggatccaagtacgac
aaggcgatgcagctgaaggttccggttctgaacgaggacgggttcgcggtcctgctcgaa
caggggccggacgcggcggcggacgcggcgcttccgaccgaggagtag
DBGET
integrated database retrieval system
