Serratia liquefaciens: M495_17735
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Entry
M495_17735 CDS
T02740
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slq
Serratia liquefaciens
Pathway
slq03030
DNA replication
slq03410
Base excision repair
slq03420
Nucleotide excision repair
slq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M495_17735 (ligA)
03410 Base excision repair
M495_17735 (ligA)
03420 Nucleotide excision repair
M495_17735 (ligA)
03430 Mismatch repair
M495_17735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slq03032
]
M495_17735 (ligA)
03400 DNA repair and recombination proteins [BR:
slq03400
]
M495_17735 (ligA)
Enzymes [BR:
slq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M495_17735 (ligA)
DNA replication proteins [BR:
slq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M495_17735 (ligA)
DNA repair and recombination proteins [BR:
slq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M495_17735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M495_17735 (ligA)
MMR (mismatch excision repair)
DNA ligase
M495_17735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M495_17735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AGQ32234
LinkDB
All DBs
Position
complement(3705857..3707878)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSEPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKAWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITLVREVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVMTDRRPADAREVVFPQHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGTLEKLFA
ADIEALKEVPDVGEVVAKHTRHFLDEELNQKVINELISDEIGINWPAPVVIVADEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIA
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagcctcactgcgccatcacgaatat
caatatcatgtgcttgacgcgccggaagtgccggatgcggaatacgatcgcctgatgcgt
gaactgcgcgagctggaaagcgcacatcctgagttgatcaccgccgactctcccacccag
cgcgtgggcgcggctcctttggcggcgttcgatcaggtacgccatgaagtgccgatgctg
tcgctggacaacgtttttgacgaagagagcttcctggcgttctacaagcgggtgcaggat
cgcctgaagagcagcgagccgctgaccttctgctgtgaactgaaactggacggcctggcg
gtcagtttgctgtacgaagacggcgagctggtgcgcgctgccacgcgtggcgacggcacc
accggtgaaaacattacctccaacgtgcgtaccatccgcgccattccgctgcgtctgacc
ggtgacaacatcccgcgtcggctggaagtgcgtggcgaagtctttatgccgcaggccggt
ttcgagcagatgaacgaagaggcgcgtcgcaaagacggcaaaatctttgccaatccgcgt
aacgccgccgccgggtcgatccgtcagcttgatccgcgcatcaccgccaagcgtccactg
accttcttctgctatggcgttggcctgctggaagggggcgaattgccgcgcagccactgg
cagcggctgatgcagttcaaagcgtggggcttgccggttagcgatcgcgccaaatgttgt
accggcagtgacgaggtattggcattctatcgtcaggttgagcaagaccgtgcgcagctc
ggctttgatatcgacggcgtggtggtgaagatcgacgatatcgatctgcaagaaacgctc
ggctttgtggcgcgtgcaccacgttgggcaacggcgttcaaattcccggcgcaggaacag
attaccctggtgcgcgaggtggaattccaggttggtcgtaccggggctattacccccgtg
gcgcgcctggagccggtgctggttgccggggtgattgtcagcaacgccacgctgcacaac
gccgacgaaattgaacgtttgggcctgcgcattggcgacacggtgatcgtgcgtcgcgcg
ggtgacgtgatcccgcaggtagttggggtgatgaccgatcgccgccctgcagacgcgcgt
gaagttgtattcccgcaacactgtccggtatgcggttccgatgtcgaaagagtcgaaggc
gaggcggtggcacgctgcaccggcgggctgatttgcgccgcgcagcgtaaagaagcactg
aagcatttcgtttcccgcagagcgttggacgtcgacggcatgggtgacaaaatcatcgaa
cagctggtggaaaaagagtacgtcaagaacccggccgatctgttccgcctgtccgccggc
attctcaccgggttggatcgcatggggccgaaatcagcgcagaatctggtcaacgcgctg
gagaagtccaagcaaaccaccttcgcccgcttcctgtacgcgttgggcatccgtgaggtc
ggtgaagccacggccgccaatctggccgcgcattttggcacgctggagaagctgtttgcg
gctgacatcgaggctttgaaagaagtgcctgacgtcggtgaagtggtggcgaaacacacg
cggcatttcctggacgaggagcttaaccagaaggttatcaatgaactgatcagcgacgaa
ataggcatcaactggccggcgccggtggtgatagtggcggacgaaatcgacagcccgttt
gccggtaaaaccgtggtgctgacgggctcgttgagccagctttcacgcgatgaggccaaa
gatcgcctgacggcgttgggcgccaaggtcagcggcagcgtctcgaagaaaaccgatttg
gtgattgccggggaagccgccggttccaagctggtgaaggcgcaagaactgggcattgcg
gtgatcgacgaagcggaaatgatccgcctgttgggtgcctga
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integrated database retrieval system
