Salinispira pacifica: L21SP2_1108
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Entry
L21SP2_1108 CDS
T03013
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slr
Salinispira pacifica
Pathway
slr03030
DNA replication
slr03410
Base excision repair
slr03420
Nucleotide excision repair
slr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L21SP2_1108
03410 Base excision repair
L21SP2_1108
03420 Nucleotide excision repair
L21SP2_1108
03430 Mismatch repair
L21SP2_1108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slr03032
]
L21SP2_1108
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_1108
Enzymes [BR:
slr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L21SP2_1108
DNA replication proteins [BR:
slr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L21SP2_1108
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L21SP2_1108
NER (nucleotide excision repair)
GGR (global genome repair) factors
L21SP2_1108
MMR (mismatch excision repair)
DNA ligase
L21SP2_1108
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L21SP2_1108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
PTCB-BRCT
BRCT
HHH_2
HHH
DNA_ligase_ZBD
DNA_pol_lambd_f
RNA_pol_A_CTD
DUF4332
RNA_ligase
DUF3701
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AHC14513
UniProt:
V5WFG2
LinkDB
All DBs
Position
1185330..1187357
Genome browser
AA seq
675 aa
AA seq
DB search
MSPNTDPRTRMDELVEQLQHHEYAYYVLSQPEITDREYDNLYHELETLEKEQPDIRRADS
PTRRVGSDLSSQLPEVDHSIPVLSLDKAYGIDEIRQWIRRCAKGLSHPFHIIIEEKMDGS
SLVLYYRGGELDMAVTRGNGRVGNDITENVRTIRMIPLRLSRNVDAAIRGEVYMTVSDFQ
AISGEGEYANPRNFASGTLRRIKSRDVARVPLRFFAYEPYGESFGDSHEDNLRQLKELGL
VVNPHQTRIPVDGEDEDSLARAITEIEKYLDMSTRRRGDLDYEIDGMVLKIDEIPFREEL
GYTGHHPRWAIAYKFESPRGVTTVNSIDVQVGRTGRITPVARIEPVFVGGTTISNVTLHN
QDYISALSLAPGDTVAVSRRGDVIPAIEEVVEKGEGEHPLWTMPESCPSCATALEKTGAH
HFCPNFDCPDRQKGRLIFFTGRNQMDIDNLGSETVITLLKEGLISDVPDLFRLNYDDIAA
LEGFAEKKAELIRQGIDAARHRPYRQVLVSLGIHDLGPKMAELLEEAGYRSIDQLYELID
RGGEAELTEIKGIGEKTVETVVEQLKEPRMRDMIAELKDVGLNFQAEEPSPAGDLPPQIF
RDQRWCVTGSFETFKPRSSAMEEVKLRGGEAVSDVSSKTTHLLAGEKAGSKLEKARKLGV
RVVSEEEFLAMLKES
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgaacacagacccccgcacccgcatggatgaactggtagaacagcttcagcac
cacgaatacgcatactatgttctcagccaaccggaaataaccgaccgtgaatacgacaac
ctctaccatgaactggaaacgctggagaaagagcagcccgacatcaggagagctgacagc
cccaccagacgtgtagggtctgacctgagttcccagcttcccgaggttgaccacagtatt
cccgtcctcagtctggataaggcctacggcatcgatgaaatccgccaatggatacgccgc
tgtgccaaagggctctcccatcccttccacataataatagaggaaaaaatggacggctca
tccctggtgctgtattaccgcggtggcgaactggacatggccgtaacccggggcaacggc
agagtcggcaacgacatcaccgaaaatgtgcgcaccatccgcatgatccccctgcggctg
agcaggaacgtggatgcggcgatccggggtgaagtctatatgacggtgagcgattttcag
gccatcagcggggaaggggagtacgccaatccccggaatttcgccagcggaaccttgcgg
agaatcaaaagccgggatgtggcacgggttcccctgcgcttctttgcatacgaaccctac
ggcgagagtttcggcgactctcatgaggataatctgaggcagctcaaggagctgggactg
gtggtaaatccccaccagaccagaattccggtggatggggaagacgaggattctctggcc
cgggccatcacggaaatagagaaatatctggatatgagcacccgccgcagaggcgatctg
gactacgaaatcgacggcatggtgctgaagatcgatgagattcccttccgggaggagctg
ggctacaccggccatcatccccgctgggccatcgcctacaaattcgaaagcccccggggc
gtaaccaccgtaaacagcatagacgttcaggtgggacgaaccggccgcatcaccccggtg
gcccggatagaaccggtgtttgtgggcggcaccaccatctccaatgtgaccctccacaat
caggactatatttccgccctgagccttgctcccggcgatacggttgcggtaagccggcgg
ggagacgtgatccccgcaattgaggaagtggttgaaaagggggaaggggagcatcccctg
tggaccatgcccgaatcctgcccgtcctgcgctaccgcattggaaaaaaccggagcccat
cacttctgccccaatttcgactgccccgatcgtcagaaggggcggctgatcttttttacc
ggccgtaatcagatggatattgataatctgggctcggagacggtgatcaccctgctgaaa
gaggggctgatttccgatgttcccgacctttttcgcctgaattatgatgatattgccgct
ttggagggctttgccgagaaaaaagccgagctgatacgccaggggatcgatgccgcccgg
caccggccctaccggcaggtgcttgtgagcctgggcatccacgatctgggaccgaaaatg
gccgagcttcttgaggaggcaggctaccgcagcatcgatcagctctacgaactgattgac
cggggcggggaggccgagctgaccgaaattaaggggatcggggaaaaaaccgtggaaacc
gtggttgagcagctgaaggaacccagaatgcgggatatgatcgccgaactgaaggatgtg
ggcctgaatttccaggctgaagaaccttcccccgccggtgatctgcccccacagatcttc
cgggaccagagatggtgcgtaaccggaagctttgagaccttcaaaccccgatcttccgcc
atggaagaggtgaaactccggggcggggaagcggtgagcgatgtgagttccaaaaccacc
catctccttgccggagaaaaagccggcagcaagctggagaaggcccgaaaactgggtgtc
cgggttgtcagcgaagaagaatttctggccatgctgaaagaatcctga
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