Sideroxydans lithotrophicus: Slit_1292
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Entry
Slit_1292 CDS
T01196
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03030
DNA replication
slt03410
Base excision repair
slt03420
Nucleotide excision repair
slt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Slit_1292
03410 Base excision repair
Slit_1292
03420 Nucleotide excision repair
Slit_1292
03430 Mismatch repair
Slit_1292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slt03032
]
Slit_1292
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_1292
Enzymes [BR:
slt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Slit_1292
DNA replication proteins [BR:
slt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Slit_1292
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Slit_1292
NER (nucleotide excision repair)
GGR (global genome repair) factors
Slit_1292
MMR (mismatch excision repair)
DNA ligase
Slit_1292
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Slit_1292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ADE11529
UniProt:
D5CRE3
LinkDB
All DBs
Position
1281223..1283328
Genome browser
AA seq
701 aa
AA seq
DB search
MINQDVTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSP
TQRVGGKPLDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEYVCE
LKFDGLALNLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVRGEV
YMARPDFERYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKVEGW
DWRETHKGVLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYKVNS
IALQEKLGFVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTTV
SNATLHNEGEIRRKGIHIGDMVIVRRAGDVIPEVVGVVPTMKVEPTIPPSNTINLELTAP
SPTLSAFMMPTSCPVCGSHVVREEGEADARCTGGLFCAAQRKQAILHFAGRRAMDIEGLG
DKLVDQLVDENIIHSLSDLYDEKVLNSQTLAALDRMAEKSAQNIVDALEKSKSTALNRFL
FALGIRHVGESTAKDLARHFGKLEAIMQANVEQLLAVPDVGPVVAQSIVDFFGEAHNREV
VQQLRILGVHWAEHEGSSVRELPLSGKTFVLTGTLANLSRDEAKSRLEALGAKVAGSVSK
KTDCVVAGVEAGSKLDKARELNVPVWDEQQLFDQLKEYEKP
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatcaagatgtgacacgtcgcgcagccttgttgcgcaaacagatcgcggaatac
gactattggtattacgtgaaggatatgcctcgtattcccgatgcggaatacgacaagctg
ttccgcgaactgcaagcgctcgaagcgcagcatcccgagctgcttgcctctgattctcca
acccagcgcgtcggcggcaagccgctggatatgttccagccggtgcgtcatgcggtgccg
atgttatcgatccgaaccgagaccgacatcagcgaccagggggcgattgcattcgatgcg
cgagtgcggcgcgagctgggattgaacgaaaacgacccgccaattgaatacgtttgcgag
ttgaaattcgacggcttggcgctcaacctgcgctacgagcagggcaggttggtgcaggcc
gctacgcgtggcgacggcgagaccggcgaggatgtgacgcagaatgtgcgcaccatccac
cagattccactatcgctggaagggatgtgccctggtgttctggaggtgcgcggcgaagtc
tacatggcccgccctgactttgagcgctacaacgaacgtcagcgccagcaggggctgcct
acgctggtgaatcctcgcaacggtgcggcgggcagcatccgccagctcgatccggcactg
gccgcgcggcgtccgctgaaattctttgcttacggccttggagaaaaggtggaaggctgg
gattggcgcgaaacacataaaggagtgctcgatcaattggaggcatggggattcccggta
agccatgaatgcagggtcgtgcacggtgcccaaggactggtggagttccatcgccgtatc
gaagccatgcgcgacagcctgccgttcgacatcgacggcgtggtatacaaggtcaacagc
atcgccttgcaggaaaagctgggttttgtctcgcgcgagccgcgctgggcggtggcgcac
aaatttccagcggaagagcaggtcacacgtcttaacggcatcgagatacaggtgggccgt
accggcaagctcacgccggtcgccaagctggagccggtgttcgtcggtggcaccacggtc
tccaacgccacgctgcacaacgagggcgagatacgccgtaagggcatacacatcggcgat
atggtgatcgtgcgccgtgcgggcgatgtgatcccggaagtggtaggtgtagtgccgaca
atgaaagtcgagccgactattccgccgtctaacactattaatttggagctcactgcaccg
agtccaactttaagtgcattcatgatgccgacgtcctgtccggtctgcggcagccatgta
gtgcgcgaggagggggaggcggatgcgcgctgtaccggcggcctgttctgcgccgcccag
cgcaaacaggccatcctgcatttcgccgggcggcgcgcgatggatatcgaggggctgggt
gacaaactggtggaccagctggtggacgagaacatcatccactcgttatcggacttgtat
gacgagaaggtgctgaattcccagacgctggctgcactggatcgcatggcggagaaaagc
gcgcagaacatcgtggatgcgctggaaaaaagcaaatccaccgcgctcaaccgcttcctg
ttcgcgctgggtatccgccatgtcggcgaaagcacggccaaggacctggcacggcacttc
ggcaagctggaagccatcatgcaggccaatgtcgagcaattgctggccgtgcccgatgtc
ggcccggtggtggcgcagagcatcgtcgatttcttcggcgaggcgcacaaccgcgaggtg
gtgcagcaattgcggatactcggcgtgcattgggctgagcatgaaggcagcagcgttcgg
gaactgccattgtccggcaagaccttcgtgcttaccggaacgctcgccaacctgagccgc
gatgaggcaaaatcgcggctggaggccttgggagcgaaagtggctggatcggtatcgaaa
aagaccgattgtgtggtggctggcgtcgaggcgggcagcaagctggacaaggcgcgcgaa
ttgaatgtgcccgtatgggatgagcaacagttgtttgaccaattgaaagagtacgaaaaa
ccatga
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integrated database retrieval system
