Streptomyces luteireticuli: AB8735_26320
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Entry
AB8735_26320 CDS
T11183
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slua Streptomyces luteireticuli
Pathway
slua03030
DNA replication
slua03410
Base excision repair
slua03420
Nucleotide excision repair
slua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB8735_26320 (ligA)
03410 Base excision repair
AB8735_26320 (ligA)
03420 Nucleotide excision repair
AB8735_26320 (ligA)
03430 Mismatch repair
AB8735_26320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slua03032
]
AB8735_26320 (ligA)
03400 DNA repair and recombination proteins [BR:
slua03400
]
AB8735_26320 (ligA)
Enzymes [BR:
slua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB8735_26320 (ligA)
DNA replication proteins [BR:
slua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB8735_26320 (ligA)
DNA repair and recombination proteins [BR:
slua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB8735_26320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB8735_26320 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB8735_26320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB8735_26320 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
XEZ42685
LinkDB
All DBs
Position
5834988..5837213
Genome browser
AA seq
741 aa
AA seq
DB search
MEQREDETVAVEQGGGLTAEVRERHALLAEQIEEHRFRYYVNNAPVISDAEFDVLMRSLE
ALEEEHPELRTPDSPTQKVAGSYETEFTAVEHRERMLSLDNAFDDEELAAWAERIAKDIG
EGSRYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTISEIPHRLRGDR
IPALVEVRGEVYFPMEKFEELNARLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLHMV
VHGVGAREGFDIDCQSHAYELLSEWGLPTAAHAEVVDSLDGVRKFIAHYGKPKVRHSMEH
EIDGVVVKLDEVPLQGRLGSTARAPRWAIAWKYPPEEVNTKLLDIRVGVGRTGRVTPQAV
VEPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREF
VMPAECPECGTGLRPMKEGDIDLRCPNARSCPGQIRERVYYLVGRECLDIENFGYVAASA
LTQPLEPATPPMLNEGDLFDLTIEELLPIRSYVRDPDSGLPKRDPKTGEEKIVPYFATKE
GNPKKNTVAMLENIEAAKQRPLARIINGLSIRHVGPVAAAALAREFRSLDRLAEATEEEL
AAVDGVSGTIATAVREWFAEDWHREIIEKWRAAGVRMEEEAAADEGPRPLAGLTVVVTGT
LASYTRDAAKEALQQQGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLKVPVLEEDGFAVL
LAEGPEAARAAAVPQEAAPAG
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacgggaggacgagacggtggctgtcgaacagggcggcggactcacggcggag
gtgcgggagcggcacgcccttctcgccgagcagatcgaggagcaccgcttccggtactac
gtgaacaacgccccggtcatcagcgacgccgagttcgacgtgctgatgcgctccctggag
gccctggaggaggagcatccggagctgcgcacgcccgactcgccgacccagaaggtcgcc
ggttcgtacgagacggagttcacggccgtcgagcaccgcgagcgcatgctgtccctggac
aacgccttcgacgacgaggagctggcggcctgggccgagcgcatcgccaaggacatcggc
gagggctcgcgctaccacttcctctgcgagctcaaggtggacggcctcgccgtcaacctc
acctacgagcacggccggctcacccgcgccgccacccgcggcgacggccgcaccggcgag
gacatcacgcccaacatccgcaccatttccgagatcccgcaccgcctgcggggcgaccgg
atcccggccctggtcgaggtgcgcggcgaggtctacttcccgatggagaagttcgaggag
ctcaacgcccgcctggtggaggccggaaagccgcccttcgccaacccgcgcaacgcggcg
gccggttcgctgcgccagaaggacccgcgcgtcaccgccacccgcccgctgcacatggtg
gtgcacggcgtcggcgcccgcgagggcttcgacatcgactgccagtcccacgcctacgag
ctgctcagcgaatggggcctgccgaccgccgcccacgccgaggtcgtcgactccctcgac
ggcgtgcggaagttcatcgcgcactacggcaagcccaaggtgcgccactccatggagcac
gagatcgacggcgtcgtcgtcaagctcgacgaggtgcccctccagggccgcctgggctcc
acggcccgcgccccgcgctgggccatcgcctggaagtacccgcccgaggaggtcaacacc
aagctcctcgacatccgcgtcggcgtcggccgcaccggccgcgtcaccccgcaggccgtc
gtcgagcccgtcaccgtcgccggctccgaggtcgagttcgccaccctgcacaaccaggac
gtcgtcaaggccaagggcgtcctcatcggcgacacggtggtgctgcgcaaggccggcgac
gtcatccccgagatcctcggccccgtcgtcgacctccgggacggcaccgagcgggagttc
gtgatgcccgccgagtgccccgagtgcgggacggggctgcgccccatgaaggagggcgac
atcgacctccgctgtcccaacgcccgctcctgcccgggccagatccgcgagcgcgtctac
tacctcgtcggccgcgagtgcctcgacatcgagaacttcggctacgtggccgcctccgcc
ctcacccagcccctggaaccggccactccgccgatgctgaacgagggggatctgttcgat
ctgacgatcgaagagctgctgcccattcggtcatatgtgcgggatccggacagcggcctg
cccaagcgcgaccccaagaccggcgaggagaagatcgtcccctacttcgccaccaaggag
ggcaaccccaagaagaacacggtcgcgatgctggagaacatcgaggccgcgaagcagcgc
ccgctggcccggatcatcaacgggctgtccatccgccacgtcggccccgtcgccgccgcc
gcgctggcccgcgagttccggtcactggaccggctcgccgaggccaccgaggaggaactc
gccgccgtggacggcgtgtccggcaccatcgccaccgccgtccgcgagtggttcgccgag
gactggcaccgcgagatcatcgagaagtggcgggccgccggcgtccggatggaggaggag
gccgccgccgacgagggcccgcgcccgctggccggcctgaccgtcgtcgtcaccggcacc
ctcgcctcgtacacccgcgacgcggccaaggaggcgctccagcagcagggcgccaaggtg
accggatcggtttcgaagaagaccgacttcgtggtcgtcggtgacaaccccggctccaag
tacgacaaggcgatgcagctgaaggtgcccgtgctggaggaggacggcttcgccgtgctg
ctcgcggagggccccgaggccgcccgcgcggccgccgttccccaggaggccgccccggcg
ggctga
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