Sander lucioperca (pikeperch): 116043440
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Entry
116043440 CDS
T07345
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04010
MAPK signaling pathway
sluc04120
Ubiquitin mediated proteolysis
sluc04140
Autophagy - animal
sluc04144
Endocytosis
sluc04620
Toll-like receptor signaling pathway
sluc04621
NOD-like receptor signaling pathway
sluc04622
RIG-I-like receptor signaling pathway
sluc05132
Salmonella infection
sluc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116043440 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116043440 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116043440 (traf6)
04140 Autophagy - animal
116043440 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
116043440 (traf6)
04621 NOD-like receptor signaling pathway
116043440 (traf6)
04622 RIG-I-like receptor signaling pathway
116043440 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116043440 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
116043440 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sluc04131
]
116043440 (traf6)
04121 Ubiquitin system [BR:
sluc04121
]
116043440 (traf6)
Enzymes [BR:
sluc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116043440 (traf6)
Membrane trafficking [BR:
sluc04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
116043440 (traf6)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
116043440 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
RING_XB3-XBAT31
TRAF3_RING
Sina_ZnF
zf-rbx1
U-box
Prok-RING_4
zf-RING_11
DM
zf-TRAF_2
CEP104_ZnF
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
116043440
NCBI-ProteinID:
XP_031145964
Ensembl:
ENSSLUG00000017786
LinkDB
All DBs
Position
3:39927076..39947174
Genome browser
AA seq
614 aa
AA seq
DB search
MTSGKENRKFWVETKSSRRFQTQSTVNVRFKSCSSASRGMTKMACFDSNKGSLEEDSYEG
AVGGELSGCALAMLEKERESLPSPSESHGTFISSTSTSILATAPLQGYDVEFDPPLESKY
ECPICLMALRNAIQTPCGHRFCKHCIEKSIRDTGQRCPVDNERLLEDQLFPDNFAKREIL
SLTVRCPNSGCAEKMELRGLENHLAQCQFATVPCPQCQQSVRKSHLEEHTTVECQRRPVS
CPDCVARFVYEESELHEQQCPFASVKCQYCEMDLIRDQMESHCDTDCPKAPIACNFSTFG
CKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWTLGPSVSSEDQGAAAAS
GSACSGPRGAAGCSSNCAPCPPSEETQRLREMDGRLVRQDHQLRELIILKETQAGHLAEL
RRRVSMLEETVRELESQQCNGIFIWRLKGFSVHLRNQEAGQPVVEHSPGFYTGRPGYKLC
LRLHLQTPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGTIRLTILDQGPEGQHHTEAMET
KPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAFVKDDTLLIRCEVTPRFDNMLHREGP
TVQPRGHEASVSRD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctggaaaggaaaacaggaaattctgggtagaaacgaaaagttcgagacgtttt
caaacgcaaagcacagttaacgttaggtttaaaagttgcagttccgcatccaggggcatg
actaagatggcatgctttgacagcaataaggggagtttggaggaggacagctatgaagga
gctgtcggtggagagctgtccggctgtgcgttggcaatgctggaaaaggaacgggaatct
cttcccagcccttcagagagccatggcaccttcatcagcagcacctctactagtattctg
gccactgcacccctccagggctatgatgtggagtttgacccgcccctagagagtaaatat
gagtgccctatctgtctcatggctttgaggaatgccattcaaacaccctgcggtcaccgt
ttctgcaagcactgcattgagaagtctattcgtgatacaggacagaggtgccctgtggac
aatgaaaggctgttagaagaccagttgtttccggataactttgccaaacgggagattctg
tcgctaactgttcgctgtccaaactctggctgtgctgagaaaatggagctccgaggttta
gagaaccatttggcgcagtgtcagtttgccactgtgccttgcccacagtgccagcagtct
gtgagaaagagccacctcgaggagcacacgactgttgagtgccagaggagaccggtgtca
tgtccagattgcgtggcacgctttgtttatgaggagagcgagcttcatgagcagcagtgt
ccctttgccagcgtgaagtgccagtactgcgagatggatctcatcagagaccagatggaa
tctcattgtgatacagactgcccaaaagcacccattgcctgtaactttagcacctttgga
tgtaaggaaaggatgcagcgccacaacctggctcagcacatgcaggagttcacgcagatg
cacatgcgctacatggctgagttcctgcgtggcctcagcctcaacggcaccacacccaag
tccctctggacgctaggaccttcggtttcctctgaggaccaaggagctgctgcagcatca
ggatcggcctgtagcgggcccagaggagctgcgggctgcagcagcaactgtgccccgtgt
ccgcctagcgaggagacgcagaggcttagggagatggatggacgattggtaaggcaggat
caccagctgcgtgagctcatcatcttaaaagaaacacaggctggccatcttgcagagtta
aggcgtagagtgtcaatgctggaggagacagtaagggagctggagtcgcagcagtgcaac
ggcatcttcatctggcgcctcaaaggtttctccgtccacctgcggaaccaagaagcaggc
cagccagtggtcgagcacagtcccggcttctacacaggccgcccgggctacaagctgtgc
ctgcgcttacacctgcagacccccaacgccccgcgctgctccaactacatctccctcttt
gtccacaccatgcaaggagcttttgacgggcagctgacctggccgttccagggcaccatc
cgcctcaccatcctagaccagggccccgagggccagcaccacacggaggcgatggagact
aaaccagacctgcaggccttccagaagcccacgatccagcgcaaccccaaaggattcggc
tacgtcacctttctgcacctgcaccagctgagtcagagagcctttgttaaagatgacact
ctactcatccgctgcgaggtgacaccacgttttgacaatatgcttcaccgcgagggacca
acggtgcagccgagggggcacgaggcctcagtttcgagggactga
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