Sander lucioperca (pikeperch): 116048417
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Entry
116048417 CDS
T07345
Symbol
trpc6b
Name
(RefSeq) short transient receptor potential channel 6 isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sluc04040
]
116048417 (trpc6b)
Ion channels [BR:
sluc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116048417 (trpc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_4
DUF5455
Cmr1_C
RpoY
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
116048417
NCBI-ProteinID:
XP_031153391
Ensembl:
ENSSLUG00000000936
LinkDB
All DBs
Position
5:complement(19362729..19379365)
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AA seq
825 aa
AA seq
DB search
MMQQQQQAVAKPRRQALRGASYLYHAQPSSCLSLTEELFLEAAEYGNIPEVRRMLEELPD
LNVNCVNYMGQNALQLAVANEHFEVTKLLLRKKELSRIGDALLLAISKGYIRIVEAILSH
PAFADAQRLTNSPSQADTNDDFFAYDEDGTRFSHDITPIILASQCHEYEIVHILLMKGAR
VERPHDYFCQCRACSEQQRCDSFSHSQSRINAYKCLASPAYLSLSNEDPVMAALELSNEL
AVLANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVKAILNGDTESRQSSETVGRQNL
IRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTTAVKSLLVLGVAVGLPVLSFM
YWIAPSSKIGKLMCGPFLKFVAHAASFMIFLCLLVLNAADRFEGTSLLPNMTTHDHPSQL
FRMKTTPFTWMEILIISWVIGHKWKIWEECRDIWSQDIREYISEPWNLLDFSILTIFMTS
FIARLMAFWHAYSAQCYVDKHYTDLSNKTLPFEIQYFQLARINWMPSDPQLISEGLYSIA
VVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFITVFVAFMVGMFTLYSHYLGA
KHNDAFTTLEESFKTLFWAIFGLSEVKSVVINIDHKFIENTGYVLYGVYNIIMVIVLLNM
LIAMFNSSFQEIEDDSDVEWKFARAKLWFSYFEHGGTLPVPFNLVPSPRSVVSLLLGIRE
FLWDVPKGKSKENANDEPELNKLRQQEDLSVEGSLCCHQDIMNRLIKRYILKAQRDKDND
EINEGELKEIKQDIFSLRYELLERANHDMETLAQLIRQMGEVMHV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcagcagcagcaggctgtagccaaacccaggagacaagcgttacggggagcc
agttacctgtaccacgctcaaccctcctcctgcctttccctgacagaggaactcttctta
gaagctgcagaatatggcaacattcctgaagtcaggcggatgctagaggagctgccagac
ctcaacgtcaactgtgtgaattacatgggccagaatgcactgcagctggcagttgccaat
gagcacttcgaggtaactaagctcctacttaggaagaaagagctctctagaataggagac
gcattgcttttagccatcagtaaaggctacatccgtatagtggaggccatactgagccat
ccggcctttgcagatgctcagaggctgactaacagtcccagccaggcggacacaaacgat
gacttctttgcctatgacgaggacggcacacgtttctcacacgacatcactcccatcatc
ctggcctctcagtgccatgagtatgaaatcgttcatatactgcttatgaagggggcccgt
gtagagcggccccatgactacttctgccagtgcagggcctgcagcgagcagcagaggtgt
gactcctttagccattcacaatcccgcatcaatgcatacaaatgtctggccagtccagcg
tatctgtccctctccaatgaagacccagtgatggcggctctggagctgagcaatgagctg
gcagttctggccaacattgagaaggagttcaagaatgattacaagaaactgtccatgcag
tgtaaagactttgtggtgggactcctggatctgtgtcgaaacacagaggaagtgaaggcc
atcttaaatggggacactgaatcacgtcaaagctctgagaccgtcggcagacaaaacctc
atcaggttaaaacttgcaataaaatatgaagttaaaaagtttgtggcacatccaaactgc
caacagcaactcctctccatctggtacgagaacttgtctggactccgtcagcagaccaca
gcagttaaaagcctcctagtccttggtgtcgctgtggggttgcctgtcctgtcctttatg
tactggatagcaccgtcaagtaagatagggaaactcatgtgtggaccgttcctgaagttt
gtggcccatgcagcatcctttatgatatttctatgcctgctggtcctgaacgcggcagac
cgctttgagggaacgtcgctgctgcctaacatgaccacccacgatcacccctcacaattg
tttcgtatgaagaccacccccttcacctggatggagattctcatcatatcctgggtcata
ggtcataagtggaagatctgggaagaatgtagagatatttggtcgcaggacatcagggaa
tacatctcagaaccctggaaccttctggacttcagtattttgaccattttcatgacctct
ttcattgccagattaatggctttctggcatgcatattctgcccagtgttacgttgacaag
cactacacggacctgtccaacaagaccttgccctttgagatacagtatttccagctggct
cgaatcaactggatgccctcagacccgcagcttatttctgaaggcctgtattcaatcgca
gtcgtgttgagtttctctcgcattgcatacatccttcctgccaacgagagcttcgggcct
ttgcagatctctctgggaagaacagttaaagacatctttaagttcatggtgattttcata
accgttttcgtggctttcatggtgggaatgttcactctgtactcgcactaccttggagcc
aagcataacgacgccttcacaacgctcgaagagagcttcaaaacgctattctgggccatc
tttggcttgtcggaagtgaaatcagtggtcattaacatcgaccataagttcattgagaat
actggctatgttctgtatggggtgtacaacatcatcatggtgattgtcttgctgaatatg
ctcattgccatgttcaacagctccttccaagaaattgaggatgattctgatgttgagtgg
aagtttgccagagctaagctctggttctcgtactttgagcacggcggcacactgcctgtg
cccttcaacctcgtacccagccccaggtctgtggtttccctcttgctggggataagggaa
tttctctgggatgtacctaaaggcaaaagcaaagaaaatgcaaatgatgagccggagctt
aacaagttgaggcaacaggaagatctgagtgtggaaggatcgctttgttgtcaccaagat
ataatgaatcgcctcatcaaaagatacatcttaaaagcacagagagataaagacaacgat
gaaataaatgaaggtgaactgaaggagatcaaacaggacatcttcagtctccgctacgag
ctgctggaaagggccaaccacgacatggagacactggcacagctcatcaggcaaatggga
gaagtcatgcatgtttag
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integrated database retrieval system
