Sander lucioperca (pikeperch): 116053361
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Entry
116053361 CDS
T07345
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a isoform X1
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sluc01009
]
116053361 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sluc04040
]
116053361 (trpc5a)
Protein phosphatases and associated proteins [BR:
sluc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116053361 (trpc5a)
Ion channels [BR:
sluc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116053361 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
116053361
NCBI-ProteinID:
XP_035849976
Ensembl:
ENSSLUG00000001298
LinkDB
All DBs
Position
17:9071225..9201323
Genome browser
AA seq
1100 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPFFSLIYLLAPKSAL
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTLVEWMILPWVVGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIAQHLDHADIEWKFARTKLWMSYFDE
GGTLPPPFNIIPSPKSILYLLVWLHNKLCRRGHAPGEETHKCENLREFTERHADSLIQNQ
HYQEVIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRHY
SSSEAARDDGAMASEDDSESGDGGGGAPRSKGVTFVTPGEGEARSPTLGVSALVRSISGM
TRTDGGGEVEREEEEEEEELEEGVGWGDEEDEEGKPKSNGLKTSVIPLSSSSTATLPCPS
SSFSSSFSSSFARTRTRLQRLSAPGSKTDSFKRLSYLFSRSKRRSPPMPLPLQSPPSYTI
SDGLLRPLGSSHSDFGLSGVTRSETRLNQVGRSVDVSNPSFSPRRANGRDSLLALPLPPP
CPCQSLHCASNMSESSSRLLDSSEDIFQGGGAGGVGEGDVDGGRARRGGGLMMIGGYMGP
CDDVTEDSCEVIEDSVTTQL
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacacagttgtactacaagaaggcgacgtactcgccgtaccgcgaccgc
atcccgcttcagatcgtccgggcggaggtggagttgtccgcagaggagagggcctacctc
accgctgtggagaaaggtgactatgcaggtgtcaagcatgccctgcgcgaggcagaggtc
tactacaacatggacgtgaactgtctggacccgctgggccgcagcgcgctcctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgctcgaccacggcatccacaccggc
gacgccttgctctacgccattaggaaggaggtggtgggcgccgtggagctgctgctgtcg
cacaggaggcccagcggcgaaaaacaggttccctcgctgatgatggacagtcagttttca
gagttcaccccggacataactcccatcatgctcgctgctcacaccaacaactacgagatc
atcaagctcctcgtccagcggaaggtcaccattcccagaccacaccagatacgatgcgac
tgtgtcgagtgtgtatccagttcagaggtcgacagtcttcgacattccaggtctcgactc
aacatctacaaggctctggcctcgccctccctcatcgcgctttccagtgaagatcccatc
ctcactgccttcagactgggctgggaactcaaagagctcagcaaggtggagaacgagttt
cgtcaggagtacgaggagctgtcacagcagtgcaagcggttcgccaaagaccttctggac
caggccaggagttctagagagctggaaaccatcctgaatcacagagacaacgaccagagc
gaggaactggaccccaggcagtgccacgacctggccaagctcaaattggccatcaaatac
caccaaaaagagtttgtggcccagcccaactgccagcagctgctggccacgctgtggtac
gacggcttcccgggctggaggagacgacactgggcggtcaaactggtcacctgcttcatc
attgggctcctgtttcctttcttctcactgatctacctgttggctccaaagagcgctctg
ggacgcttcatcaagaagcccttcatcaagttcatctgtcacacggcgtcctacctgacc
ttcctcttcctcctgctgctggcctcgcagcacattgcccggaccaacctgcacatgcag
ggacccccgcccaccctcgtcgagtggatgattctcccgtgggtagtggggttcatctgg
gcagagattaaggagatgtgggacgggggatttacagagtatatccacgactggtggaac
ctgatggacttcgccatgaactcactctacctggccaccatatcactgaagatagtggcc
tacgttaagtataactcctctcgtcccagggaggaatgggagatgtggcaccccacgctg
atagccgaggctctgttcgccatcgccaacatcttcagctcgctcagactcatctccctc
ttcaccgccaactcccacctcgggccactgcagatctcactgggcaggatgctgctggac
atcctcaagttcctcttcatttactgtctggtcctgctggcgtttgccaatggtctgaac
cagctgtatttctactatgagaccaaggcctcagaagaacccaataactgcaagggcatc
cgctgtgagaggcagaacaacgccttctcaacgttattcgagactctccagtctctgttc
tggtcgatattcgggctgctgaatctgtacgtcaccaacgtgaaggcccgccacgagttc
acggagttcgtcggggcgaccatgttcgggacgtacaacgtcatctcgctggtggttctg
ctcaacatgctcatcgccatgatgaacaactcctaccagctcatcgctcaacatttggac
cacgccgacatagagtggaagtttgcccgcaccaagctgtggatgagctactttgacgag
ggcggcacgctgccgcctccattcaacatcatccccagccccaagtccatcctgtacctg
ctcgtgtggctccataacaagctgtgcagaagaggccatgcgcccggggaggaaacacac
aaatgtgaaaacctccgagagttcacggaacgccacgctgacagtctgatacagaaccag
cattaccaggaagtgatccggagcctggtgaagaggtatgtggctgccatgatacgcagt
gccaagacggacgagggactaacagaggagaactttaaggagttgaagcaggacatctcc
agtttccgctacgaggtcctggatctcctcggcaaccggcgccctccccggcgacactac
tcctccagcgaagcagcgagagacgatggcgccatggcgtcggaggacgacagcgagtcg
ggcgacggtggcggcggagccccgaggtcaaagggcgtgacgttcgtgaccccgggggag
ggcgaagcgaggtcgccgacgctcggcgtgtccgccctggtgcgctccatttctgggatg
acccggacagatggagggggagaggtagagagggaggaggaggaggaggaggaggagctg
gaggagggtgtcggatggggggacgaggaggacgaggaggggaaaccaaagagcaacggg
ctgaagacgagcgtcatccctctatcctcctcctccaccgccacactcccctgcccatct
tcatccttctcctcgtccttctcctcatcgttcgctcgcaccaggacccgcctgcagcgc
ctctcggctccgggatcaaagacggactctttcaagcgcctctcctacctgttctcgcgc
tccaagcgcagatccccgccgatgcctctcccgctccagtccccgccctcctacaccatc
tccgacgggttgctccgccccctgggcagctctcactccgacttcggactcagcggcgtg
acccgaagcgagacccgcctgaaccaggtgggccgctcggtcgacgtcagtaacccttca
ttctccccgcggagagcgaacgggcgggactcacttctggcgctgcccctcccacccccg
tgcccctgccaatccctgcactgtgcttccaacatgtccgagtccagctcgcgcctcctg
gactccagcgaggacattttccagggcggaggagcgggaggagtgggcgagggcgacgtg
gatggaggaagggcaagaagaggaggagggctgatgatgattggcgggtatatgggaccc
tgcgacgatgtcacagaggacagctgtgaggtcatagaggactctgtcaccacgcagcta
tag
DBGET
integrated database retrieval system
