KEGG   Sander lucioperca (pikeperch): 116055372
Entry
116055372         CDS       T07345                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116055372 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sluc03041]
    116055372 (smndc1)
Spliceosome [BR:sluc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    116055372 (smndc1)
 Complex B
    116055372 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    116055372 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR PUA_4
Other DBs
NCBI-GeneID: 116055372
NCBI-ProteinID: XP_031163203
Ensembl: ENSSLUG00000021165
UniProt: A0A8D0A2M5
LinkDB
Position
15:complement(22803571..22817819)
AA seq 238 aa
MSEDLVKQLNSYKAQLQQVEVALSTDSENEDLLKLQKDLQEVIDLTKDLLTSQPTDSASS
TDGSETVPLKHGWKVGDKCMAVWNQDGQVYEAEIEEIDRENGTAAVTFAGYGNAEVIPLQ
NLRAREEGRRSDEDGSLKPKSKKEQIAEQREYKKKKAQKKVLRMKELEQEREEQKSKWQQ
FNNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYHDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggaagatttggtgaaacagttgaacagctacaaagcccagctacagcaagtagaa
gttgccttatcgaccgactcagaaaatgaagaccttcttaaacttcagaaagacttgcag
gaagtcatcgatttgacaaaagacctcctgacctcacagcccactgatagcgcttctagt
accgatggctcggaaacggtacccctgaagcatggctggaaagtgggggacaaatgtatg
gctgtgtggaatcaggacggacaggtgtatgaggctgagattgaggagatagaccgggag
aacggaaccgcagccgtcaccttcgctgggtacgggaatgctgaagtgattcctctgcag
aacctcagagcaagagaggaggggagacgttctgacgaggatgggagtctaaagccgaaa
tcaaagaaagagcagatagcggagcagagagagtataagaagaagaaagcacagaagaag
gtactgaggatgaaggaattggagcaagagagggaggaacaaaagtcaaagtggcaacag
ttcaacaacaaagcctactcaaagaacaagaaaggacaggtaaagaggagcatatttgca
tctccagaaagtgtaaatggaaaggttggagtgggaacatgtggtattgcagacaagcca
atgacccagtaccatgacacgtcaaaatacaatgtcagacatctaatgcctcagtga

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