Sander lucioperca (pikeperch): 116060011
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Entry
116060011 CDS
T07345
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04115
p53 signaling pathway
sluc04210
Apoptosis
sluc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
116060011 (apaf1)
04115 p53 signaling pathway
116060011 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116060011 (apaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
APAF1_C
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WHD_APAF1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NB-ARC
Beta-prop_EML
CARD
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
RMC1_N
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_WDR35_TULP_N
CARD_2
Beta-prop_Vps41
WD40_RFWD3
WD40_like
AAA_22
WDR54
AAA_16
AAA_18
Beta-prop_pof12
Motif
Other DBs
NCBI-GeneID:
116060011
NCBI-ProteinID:
XP_031169201
Ensembl:
ENSSLUG00000013724
LinkDB
All DBs
Position
20:complement(8183383..8226862)
Genome browser
AA seq
1297 aa
AA seq
DB search
MALEEGARSCLLRFRHRLEQDIKPSYLMDHMISDGVLTVDEEERISNKPTRKDQAVALLE
LLLRKDNRGYISFYNALVKETYGDLANLLHDDLPQTLPGAYKSSSDGCTSYVQTVLSEGG
VPQRPVVFVSRPEFVNCVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRHHGLIEECF
PGGIHWLSIGQLDKPDLMVKIQSLCFRLEQSLDSPSLHRPPNSLDEAKERLRYLTLRRYP
RSLLILDDIWDSTVLKAFDIHCRILLTTRNRSLTDSVSGAKYEVEVESGLDEKKGLEILA
LYTNTKLHGLPEEARSIVKECKGSPLVVSLIGALLKEKPNRWRYYLNQLQQKQFKRIRKS
SSYDYDALDQAMDASIEVLPDEHRELYKDLSVLEKDIKVPAKVLSVLWDLEPEHVEDILE
EFVNKSLLFVDSNNKPHLYYLHDLQLDFLVEQNRTQLESLHNKVVHQYQQHYRDGPPTSG
DEECLYWIRFLTHHMAKANLSQELYSLMFSLDWVSIKAQIMGPAHLINDYVEYGPILDKE
NSEVRSQFQEFLSLNGHQLEQRPFPDVVQLALSQPHTSEVYRQALLQAQDRASTGKLYFD
WLNKSSVENLSRLVIHPHQGSIYSACFSHDGAKIASSGACKTLKVFKSTSGEKLTEIQAH
DDEVLCCAFSPDDRLLATCSSDRKVKVWNVERSMLLRVFEEEHEEQVNHCQFTNTTRRLL
LATCSNDKFLNVKLWNLNKPTSQNTMFGHFEPVNHCCFSPDDTYLSTSSNDGTVKLFQMS
SANEWKTINVRNMFAESDEEVLVKCSTWTADGKHIICAARNAALVFDVETSDMLLEIRTN
RLSTVQYCHACSTSNLLAIAFSNYAVELWDLEANKKMADCSGHLSWVQRVQFSPDGSQLL
SCSDDQTVRLWETNKVHTSSAVCLKRDSDVLFYDEEIIVSAADNCNRLQVRDGRTGSVLF
QSEEKSSRIRCTCMCRQPSAVALGQEDGTVQTAGLTARKVLRTLGCRIQRLLTSFRGLIL
AVGLCTGSVQVLEVPSGKLLATLLGHTKTVLHCRFSHNGQTLITSSEDTTIRVWRWQSGE
CKVLQGHKEQVRSFSLLSTLPVDTRLLSWSFDGTVKMWDIESGEKLQDIQAHRGAILSCH
VSPDGCLFATTSADKTAKLWQCESWQCVHTLSGHQDCVRSCRFSWDSRCLATGDDNGEIR
LWSVKDGSLLRICSRDGKDGMDSLHGGWVTDLHFSPDNSLLVSTGGYIKWWDVEKGEALQ
TFFPTGTALKRIHVSADFSTFVTIDSIGILYILERVV
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggaggaaggggcacggagctgtctgctgcgctttcgccacagactggagcag
gacataaagccctcctacctgatggaccatatgatcagtgatggtgtgctgactgtggat
gaggaggagagaatcagtaacaagcccaccaggaaggatcaggctgtggccctgctggag
ctgttgcttaggaaggacaaccgtggctacatctccttctacaatgccctggtcaaggag
acatacggtgatttggccaatctgctacatgatgacctaccgcagacgttacccggtgca
tataaaagctcctctgatggctgcacatcttatgtccagacagtgctcagtgaaggtggc
gtaccacagaggcccgtggtgtttgtgagccggccagagtttgtgaactgcgtcagggag
aaactctaccggctgcagaaagagcctggctgggtcactgtcttcggcatggcaggctcg
ggaaaatccgtcctggcggctgaggctgtcagacaccatggactcatcgaagagtgcttt
cccggagggatccattggctgtccattggccagctggacaaaccagacttaatggtgaag
atccagtcattgtgtttccgtcttgagcagagcctggattccccctccctccaccggccc
cccaactctctggatgaggccaaggagcgcctgcgctacctcaccctgcgcagatatcca
agatctctgctgattctagatgatatctgggacagcacagtactaaaggcgtttgatatc
cactgtcggattcttttgaccaccagaaatagaagcctcactgactctgttagtggtgcc
aaatatgaggtggaagtggagagtggtctggatgaaaaaaagggacttgagattcttgct
ctgtacactaacactaaactccacggacttcctgaggaagctcgcagcatagtcaaagaa
tgcaaaggttcccctctggtggtgtccctgatcggggctcttctcaaagagaaacccaac
cgttggcgttactacctcaaccagttgcagcagaagcagttcaagcgcataaggaagtca
tcgtcttacgactacgacgccctggaccaagccatggatgcgagcattgaagtcctgcct
gacgaacatcgagagctctacaaggaccttagcgtgttagagaaggacatcaaagtccct
gcaaaggtgctgtctgttctgtgggacctggagccggagcacgtggaggacattctcgag
gagtttgtcaacaagtctctgcttttcgtggacagtaacaataaaccccacctgtactac
ctccatgacctccagctggacttcctggtggagcagaatcgcacccagctcgagagcctc
cacaataaggtggtgcatcagtaccagcagcactacagagatggtcctcccacctcagga
gatgaggaatgtctctactggatcagattcctgacccaccacatggccaaagccaacctc
tcccaggagctctactccctcatgttttctctggactgggttagcatcaaggcccagatc
atgggcccagctcacctcatcaatgactatgtggaatatggacccattctggacaaagag
aacagtgaagtgcgcagtcaattccaggagtttctctctctgaacggccaccagctggaa
cagcgtcctttccctgacgtggtgcagcttgctctgtctcagccacatacctccgaggtc
tacagacaggctctactgcaagcacaggaccgggccagcacggggaaactctactttgac
tggctgaataagagcagcgtagagaatctgtcccgtctggtgatccacccccaccagggc
tccatctactccgcctgcttctcccacgatggagccaagatcgcctccagtggagcctgc
aagacactaaaggtgtttaaaagcacctcaggtgagaagctcacagagatccaggcccat
gatgacgaggtgctctgctgtgccttctcccctgacgaccgtctactagcaacctgctcc
agtgacaggaaagtcaaggtgtggaacgtggagcgatccatgctgctgagggtctttgag
gaggagcatgaagagcaggtcaaccactgtcagtttaccaacacgacacgacgcctcctg
ctggccacctgctccaacgacaagttcttgaatgtcaagctgtggaacctcaacaagcca
acctcccagaacaccatgtttggccactttgagccagtcaaccactgctgtttctctcct
gatgacacctatttgtccacttcctccaacgacggtaccgtcaagctatttcagatgtcg
tctgcgaatgagtggaaaacaatcaacgtgagaaacatgtttgcagagagtgatgaagag
gtccttgtcaagtgcagcacctggactgctgacggcaaacacatcatatgtgcagccagg
aacgctgctctggtgtttgatgtggagacatcggacatgttgttggagatcagaacgaat
cgtctgagcacggtgcaatactgtcacgcctgttctaccagtaacctgctggcgatcgca
ttctcaaactacgctgtggagctgtgggacttggaggccaataagaagatggctgactgc
agcgggcacctgagctgggtccagcgtgtccagttctctcctgacggctcacagctgctc
tcctgctccgacgaccagactgtcaggttatgggagactaacaaggtgcacacctcctca
gctgtctgcctaaaaagagactcagacgttctcttctacgatgaagaaatcatcgtgtca
gctgcagataactgcaacagactgcaggtgcgtgatggcaggacaggatcagtgctgttc
cagtcggaggagaagtcgtccaggatccggtgtacgtgtatgtgcagacagccctctgct
gtggccctgggccaggaagatggcactgtacagacagcagggctaacagctagaaaggta
ctgaggacacttggctgcaggatccagcgactgttgacctctttcagggggttgattctg
gctgtagggctatgcacaggcagcgtgcaggtgttggaggtgccctctgggaagctccta
gccacactgctgggacacaccaagacggtgctgcactgccggttcagccacaatggccaa
acactgatcacatcctccgaggacaccaccataagggtgtggaggtggcagtctggagag
tgtaaagtacttcagggtcacaaggaacaggtcagaagcttctctctgctctccaccttg
cctgttgacacaagactgctgtcctggtccttcgatggcactgtcaagatgtgggacata
gaaagtggagagaagctacaggacatccaggctcatcggggagccatcctgtcctgtcat
gtatcgccagacggatgcctcttcgccaccacctctgctgacaagactgctaagttgtgg
caatgtgagtcctggcagtgtgtccacaccctgagcggccaccaagactgtgtccgaagc
tgccgattctcctgggacagccgatgccttgcaacaggagacgacaacggagagattcgg
ctctggagtgtcaaggacggctctttgctgaggatttgttcccgtgacgggaaggacggc
atggactcactccacggaggctgggtgaccgacctgcacttctccccagacaactctctt
ctggtctcgactggcggttacatcaagtggtgggatgtggagaaaggcgaggccctgcag
accttctttccgaccggaacagcgttgaagaggatccacgtctcagccgacttctctacc
tttgtcaccattgacagcatcggaatactctacatcctggagagggtggtgtga
DBGET
integrated database retrieval system
