Sander lucioperca (pikeperch): 116063890
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Entry
116063890 CDS
T07345
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116063890 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116063890 (eftud2)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116063890 (eftud2)
Complex C
U5 SnRNP specific factors
116063890 (eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
116063890
NCBI-ProteinID:
XP_031174749
Ensembl:
ENSSLUG00000012422
LinkDB
All DBs
Position
21:complement(26035522..26049127)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAGDRDVDEGDEDDDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTHGDINYNEFAQRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARNKIEHTYTGGMDSDLGEAMVECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTLGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNIASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttggaaactacatcggtccagagcttgactctgac
gacgatgaagatgatctggatgcaggggacagagatgttgacgagggtgatgaagatgat
gatgatgagcctgctgatgctgatgaggatgttccgggtatggaggtggtcctgcatgag
gacaagaagtactatcctacggcagaggaggtttatgggcccgaagtggaaactattgtc
caagaggaagacacacaacctctcacagagcctatcatcaagcctgtgaagaacaagcag
ttcaccctgatggagcaggagttacctgccactgtttatgatatggaattccttgcagat
ctaatggacggtcctgagctaatccgtaacatcaccctgtgtggtcaccttcaccacggc
aagacctgttttgtggactgcctgattgagcagacacacccagaaatcaggaagagagat
gatgtggatctccgttacacagacatcctctttacagaacaggagagaggagttggtatc
aagagcacccctgtcacaatggtcctaccagactccaggggcaaatcctaccttttcaac
atcatggatacaccaggccacgtaaacttctctgacgaggtcacatctagcatccggatc
tcagacggtgttgtcctcttcatagacgcagcagaaggagtgatgctgaacactgagcgc
ctgatcaaacatgcagttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattgtggagctcaaattgcctcccacagatgcttattataaacttcgtcacatt
gtggatgaggtcaatggtttgctcagcacatactcaacagacgagaacttggtggtgtct
cctctccttggaaatgtgtgctttgccagctctcagtacagtatctgtttcactctgggg
tcctttgcaaagatctactcagacacccatggtgacatcaactataatgagtttgcccag
aggctttggggagacatttatttcaaccccaaaactcgcaagttcacaaagaaagctccc
agcagtaactctcagcgcagctttgtggaatttgttctggagcccctctacaagatcctc
tcacaggtggttggggattgtgacacatctctccccagagttctggatgagttggggatc
cacctgactaaagaggaactgaagctgaacatcagacccttactgaggctggtctgtaac
cgcttctttggagagtttactggctttgtggacatgtgtgtacaccacatcccctcacca
caggagggtgctcggaacaagatagagcacacgtacactggaggtatggactcagacctt
ggggaggccatggtagagtgcgaccctgatggtcctttgatgtgccacaccactaagatg
tacagcacagaggatggggttcagttccatgcctttggcagggtgctgagcggcaccatt
caggcaggtcagcctgtcaaggttttaggagagaactacacccttgaagacgaggaggac
tcccaggtctgcactttgggccgtctctggatttcagttgccagataccaaattgaagtg
aaccgagtgccagcaggcaactgggttctcatcgaaggttgtgaccagccaatcgtcaag
accgccacaatcacagagcccagagggaatgaagaggctcagattttcaggccactgaag
ttcaacatagcatcggttataaagattgcagttgagcctgtcaacccatcagagctaccg
aaaatgttggatggactaaggaaggtcaacaaaagctatccgtctctcaccacaaaggtg
gaggagtctggagagcatgttatcttagggacaggagagctctacctggactgtgtcatg
cacgacctgcgcaagatgtactctgagatcgacattaaagttgctgaccctgttgtgact
ttctgtgaaacggttgtggaaacatcatcactcaagtgcttcgctgaaacgcctaacaaa
aagaataagatcaccatgattgctgagcccttagagaaggggctggctgaggacatagag
aacgaagtggtgcagatcacatggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggctgccaggtccatctgggccttcggaccagacaccacggga
ccaaacatccttgtagacgacacactgccctccgaggtggacaaggcgctgctcggctca
gtcaaagacagcatagttcagggcttccagtggggcaccagggaggggccactgtgtgat
gagcccatcaggaatgtcaagtttaagatccttgacgcagtcattgctcaggagcctctc
cacagaggagggggccaggtcatccctacagccaggagagtggtgtactcggctttcctc
atggccactccaaggttgatggagccttattactttgtggaggttcaggctccagctgat
tgtgtatctgccgtctacacagtgctggctcgtagaaggggtcatgtcacgcaggatgca
cctattccagggtctcctctctacaccattaaggctttcatcccggccatcgactctttt
ggctttgagacagatcttcgcactcatacacagggacaggcctttgctctgtctgtgttc
caccactggcagatcgtccctggtgaccctttagataagagtattgtgatcaggcctctg
gagcctcagcctgccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaggatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtacttaactaccccctgtga
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