Sander lucioperca (pikeperch): 116066182 Help Entry 116066182         CDS       T07345                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism sluc  Sander lucioperca (pikeperch) Pathway sluc04115   p53 signaling pathway sluc04145   Phagosome sluc04148   Efferocytosis sluc04350   TGF-beta signaling pathway sluc04510   Focal adhesion sluc04512   ECM-receptor interaction sluc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sluc00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116066182 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116066182 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116066182 (thbs1b)    04148 Efferocytosis     116066182 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     116066182 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     116066182 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     116066182 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sluc04131]     116066182 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sluc00536]     116066182 (thbs1b) Membrane trafficking [BR:sluc04131]  Endocytosis   Phagocytosis    Opsonins     116066182 (thbs1b) Glycosaminoglycan binding proteins [BR:sluc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116066182 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 Laminin_G_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  116066182 NCBI-ProteinID:  XP_031177941 Ensembl:  ENSSLUG00000003063 LinkDB All DBs Position 19:9622175..9635174 Genome browser AA seq 1169 aa AA seqDB search MKLTGIFLLLMFWTCESTRVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYAGCEEVNTAELDA PIQSILTLETPASAQLRIGKGAAKDRFMGVLQNVRFVFGASLEVILRNKGCQSSMTTDSV ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCDPPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCEGEGRQT EKCQKSQCPINGNWGPWSPWDTCTLTCGGGLQTRKRLCNDPAPKYGGKECVGNAKDTQLC NKKACPIDGCLSNPCFDGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE FNGVHRCENTDPGYNCLPCPPRYSGPQPFGRGVEQAAAKKQVCTPRNPCLDGSHDCNKNA RCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDSNGEGDACAVDIDGDGIMNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacagggatatttttgctgttgatgttttggacctgcgagagtacgcgagtc gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcgtcaaagtcccgaag aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaaaatc ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctgatcgactcc atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaagcggaccagg ggaagcctcttgaccgtggagaagcaggacggctccggacccgtgtttgagatcgtctcc aacggcaaggcgaacaccttggacatcgttttctccaccgagaacaagcagcaggtggtt tccattgaagatgtggatctggccactggccactggaagaacatcacgttgttcgtgcag gaggaccgggcgcagctgtacgcgggatgcgaggaggtgaacaccgccgagttggatgcg cccatccagagcatcctgacgctggagaccccggccagcgcgcagctcaggattgggaag ggagccgcgaaggacaggttcatgggggtcctacaaaacgtgcggtttgtgtttggagcg tcactagaggtcatcctccgcaacaaaggatgccaaagctccatgacgactgactcagtg attctggagaacctcaatggctcctcagccattagaacagagtacactggacacaagact aaagacctgcagatggtctgtggcttctcatgtgaggacctggtcagcatgtttaaggag ctgaagggccttggtgtggtggtcaaggagctgtccaatgaactccgccaactgacggat gagaacaagctgattaagaaccgcattggcattcacagtggcgtctgcatccacaacggc attgtgcacaagaacagagacgagtggaccgtcgatgactgcaccgagtgcacttgtcag aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgtgctaatgctact gttcctgatggagagtgctgcccacgctgtgacccaccgagtgactatgcagaggacggc tggtcgccatggtctgaatggacccattgttccgtgtcttgtgggcggggcatccagcag cgtgggcgctcttgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaagcgattcaagcaggacggcagctggagccattgg tcaccatggtcatcctgctctgtcacctgtggtgctggtgtcatcacccgtatccgcctc tgcaactcccccacccctcagcttggaggcaaggactgtgagggagagggccggcaaacc gagaagtgtcagaaatctcagtgccccatcaatggcaactggggaccctggtcaccgtgg gatacctgcactctcacctgtggaggtggtctccagactcgtaaacgcctgtgcaatgac ccagcaccaaaatacggtggcaaagagtgcgtcggtaatgccaaagacacccagctgtgc aacaagaaagcctgtccaattgatgggtgcctgtctaacccctgctttgatggagccaag tgcaccagtttccctgatggttcctggaagtgtgggaagtgcccagctggctacactggc aacggtatcaagtgtaaagatgttgatgagtgcaaggaggtcccagacgcttgctttgag tttaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgccct cctcgctattcaggaccccaaccgtttggcagaggagtggagcaggctgctgctaagaaa caggtgtgcacgcctcgtaatccctgcctcgatggaagccatgactgcaacaaaaacgcc cgctgtaactacctcggacagtttgcagatcccatgtaccgctgcgagtgcaagcctggc tatgctggcaacggccatatctgtggagaggacacagatctggatggatggcccaacgct gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgtcccaacctc cccaactctgggcaggaagattacgataaggatggcattggagatgcttgtgacaatgat gatgacaatgatggcattcctgacgatagggataactgtccattcgtgtacaaccccagg cagtatgattatgaccgtgatgatgtgggtgaccgctgtgacaactgcccctacaatagt aacccagaccaaacagacacagacagcaatggagagggagacgcctgcgctgtggacatt gatggagatggcattatgaacgagaaggacaactgcccctatgtgtacaatgtcgaccag aaagacacagatctggacggagtgggagacatgtgtgataactgccctctggaacataat cctgatcaggtggattcagatgatgaccgggtgggagacaagtgtgacagcaaccaggac atcgatgaggatggacatcagaacaacctggacaactgcccatacatccccaacgccaac caggctgatcatgacaaggatggcaagggagacgcctgcgaccatgatgacgacaacgac ggcatccctgatgacaaggacaactgcagactggccttcaatcctgaccaactggactct gatggtgatggtcgtggagatgcttgcaaagatgactttgaccaagacaatgtgcccgac atctatgacgtgtgtcccgagaactttgacattagtgagacagacttccgcaagttccag atggttcctctggaccccaaaggcacctcgcagattgatcctaactgggtcgtccgccat cagggcaaagagctggttcagactgtcaactgcgaccctggcatcgctgttggttaccac gaattcaattcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat tatgccggctttgtattcggctaccagtccagttccaggttctatgtggtgatgtggaag cagattacgcagacatactggtctaataaacccaccaaagcccagggctactctggcctg tccatcaaagtggttaactccaccactggcccaggagagcacctcaggaacgccctctgg cacacaggaaataccccaggacaggtccgcactctctggcacgaccctaagaacgttgga tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaacaggacttatt agagtcgtgatgtacgagggcaagaagatcatggcagattctggtagcatctatgacaaa acatatgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttttca gacctcaagtatgaatgcagagatgtctaa

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