Streptomyces luomodiensis: PS467_28870
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Entry
PS467_28870 CDS
T10277
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sluo Streptomyces luomodiensis
Pathway
sluo03030
DNA replication
sluo03410
Base excision repair
sluo03420
Nucleotide excision repair
sluo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sluo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PS467_28870 (ligA)
03410 Base excision repair
PS467_28870 (ligA)
03420 Nucleotide excision repair
PS467_28870 (ligA)
03430 Mismatch repair
PS467_28870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sluo03032
]
PS467_28870 (ligA)
03400 DNA repair and recombination proteins [BR:
sluo03400
]
PS467_28870 (ligA)
Enzymes [BR:
sluo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PS467_28870 (ligA)
DNA replication proteins [BR:
sluo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PS467_28870 (ligA)
DNA repair and recombination proteins [BR:
sluo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PS467_28870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PS467_28870 (ligA)
MMR (mismatch excision repair)
DNA ligase
PS467_28870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PS467_28870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WNE99056
LinkDB
All DBs
Position
6819107..6821329
Genome browser
AA seq
740 aa
AA seq
DB search
MAGEQQSTVPAEARDEHVKLAEQVEEHRFRYYVKDSPVISDAEFDKLLRRLEALEEEYPE
LRTPESPTQKVAGAYETEFTEVEHRERMLSLDNAFDDEELAGWADRIAKELGSGSYHFLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLKGDRVPALVEVRG
EVFLPRERFAELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREG
FDIDRLSQAYELLHEWGLPTAAHFKVVDSIEGVREYIAYYGDNEHRHSVEHEIDGAVVKL
DEIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAACPEC
DTPLQPAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQPLEPAE
PPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFATQKGEAKKNALA
MLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEAGEEELAAVEGVGPT
IAASVKEWFAVDWHREIVEKWRRAGVRLEEVGGEDEGPRPLAGLTVVVTGTLQSYTRDGA
KEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAVQVKVPVLDEGGFGVLLEQGPDAAR
EAALTPPEESGEQAGEEAGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcgacggtgcccgcggaggcacgggatgagcacgtcaagctc
gctgagcaggtcgaggagcaccgcttccggtactacgtgaaggactccccggtcatcagc
gacgcggagttcgacaagctcctgcgcaggctggaggcgctggaggaggagtaccccgag
ctcaggacgccggagtcgcccacccagaaggtcgcgggcgcgtacgagacggagttcacc
gaggtcgagcaccgcgagcggatgctcagcctggacaacgccttcgacgacgaggagctg
gccggctgggcggaccgcatcgccaaggagctgggcagcggctcgtaccacttcctgtgc
gagctgaaggtggacggtctcgcggtcaacctcacctatgagcacgggcggctgacccgc
gccgccacccgtggtgacggccgcaccggcgaggacatcacgcccaatgtgcgcacgatc
gccaagattcccaaccggctcaagggcgaccgtgtcccggcgctggtggaggtgcgcggc
gaggtcttcctgccccgggagcggttcgccgagctgaacgcgcggctggtggaggccggc
aagccgccgttcgccaacccgcggaacgcggcggcgggttcgctgcgccagaaggacccg
aaggtcaccgcctcccggccgctggacatggtggtgcacggcatcggcgcccgggagggc
ttcgacatcgaccggctgtcgcaggcgtacgagctgctgcacgagtgggggctgccgacc
gccgcccacttcaaggtggtggactcgatcgagggcgtccgtgagtacatcgcgtactac
ggggacaacgagcaccgccactcggtggagcacgagatcgacggcgcggtcgtcaagctg
gacgagatcccgttgcaggggcggctcggctccacctcccgggcgccgcgctgggcgatc
gcctggaagttcccgcccgaggaggtcaacaccaagctggtcgacatccgggtgggcgtg
gggcgcacggggcgggtgacgccttatgcggtggtcgagccgatcacggtcgcgggctcg
gaggtcgaattcgcgacactgcacaaccaggatgtcgtcaaggccaaaggcgtgctgatc
ggtgacaccgtggtgctgcgcaaggcgggcgatgtcattccggagatcctggggccggtc
gtcgatctgcgggacggcagcgagcgggaattcgtgatgccggccgcgtgccccgagtgc
gatacgccgctccagcccgccaaggagggcgatgtcgatctgcggtgccccaacagccgg
tcctgcccggcgcagttgcgcgagcggattttctatctcgcggggcgcaaatccctggac
atcgagaacctcggttatgtggccgcggccgccctcacccagccgctggaacccgccgaa
ccgccgctgagggacgagggcgatctgttcgatctgaagatcgaacaactgctgcccatt
cgctcgtacgtactcgacccggacagcggactgcccaagcgcgatccggagaccggcgag
gagaaggtcgtcaccttcttcgccacccagaagggtgaggccaagaagaacgccctggcg
atgctggccaatatcgaggcggccaaggagcgcccgctggcccggatcatcaccggtctt
tcgatccgtcatgtcggccccgtcgcggccaccgcgctggcccgtgaattccgctccctg
gaccggatcgccgaggcgggcgaggaggagctggcggccgtggagggggtgggtccgacc
atcgccgcctcggtcaaggagtggttcgcggtcgactggcaccgcgagatcgtcgagaaa
tggcggcgggccggggtccggctggaggaggtgggcggcgaggacgaaggcccccgtccg
ctggcgggactcaccgtcgtggtcaccggcacgctccagtcgtacacccgggacggtgcc
aaggaggcgttgcagagccgtggggccaaagtcaccggatcggtttcgaaaaagactgat
ttcgtggtggtcggcgacaatccgggttccaagtacgacaaggccgtgcaggtgaaggtt
cccgtgctcgatgagggcggattcggcgtgctgctcgaacaggggcccgacgcggcgcga
gaggccgcgctgacgcctccggaagagtccggggagcaggccggtgaggaggcgggggag
tag
DBGET
integrated database retrieval system
