Sphingomonas lutea: H9L13_04830
Help
Entry
H9L13_04830 CDS
T06880
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slut
Sphingomonas lutea
Pathway
slut03030
DNA replication
slut03410
Base excision repair
slut03420
Nucleotide excision repair
slut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L13_04830 (ligA)
03410 Base excision repair
H9L13_04830 (ligA)
03420 Nucleotide excision repair
H9L13_04830 (ligA)
03430 Mismatch repair
H9L13_04830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slut03032
]
H9L13_04830 (ligA)
03400 DNA repair and recombination proteins [BR:
slut03400
]
H9L13_04830 (ligA)
Enzymes [BR:
slut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L13_04830 (ligA)
DNA replication proteins [BR:
slut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L13_04830 (ligA)
DNA repair and recombination proteins [BR:
slut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L13_04830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L13_04830 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L13_04830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L13_04830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QNN68206
UniProt:
A0A7G9SK31
LinkDB
All DBs
Position
948960..951035
Genome browser
AA seq
691 aa
AA seq
DB search
MDVVHQPAGRGLRVTSELSEAQAANRLMRLAKEIARHDKLYHDQDAPEISDADYDALVRE
NRELEARYPHLVRADSPSRRLGASPTGPLAKVPHARPMLSLDNAFSAEEVHEFVARVRRF
LNLADDEPIALTAEPKIDGLSCSLRYEHGQLALAATRGDGAVGEDVTPNVRTIGDIPQAI
SGAPDVLEVRGEVYMSKADFAALNQRQEASGGKIFANPRNAAAGSLRQKDPAITAARPLC
FLAHGWGELSEPLAMLQLLAMRKIESFGFPVSDLLKRCETIEEVLEHYAAIEQARADLPY
DIDGVVYKVGRLDWQERLGFVGRAPRWGLAHKFPAEKAETTLEAIDIQVGRTGKLTPVGR
LKPVGVGGVIVANVTLHNRDEIARLALRVGDRVRIQRAGDVIPQVVENLTRDVKRPAYVF
PDHCPQCDSEAVAAEGEVDVRCTGGLICPAQRFERLKHFVSRGALDIEGLGEKSIAEFIA
LGWLGSPADIFRLRAHRGDLLGREGWKEKSVDNLLAAIEAKRAPDPVRFLFGLGIRHVGV
VTAKDLLKCFATVEELRRVATSPDAQAELAAVEGVGPVVAEALVDFFHEDHNRAVLDDLL
SEVTPLPFVSNARQTEWSGKTIVFTGTLETMSRDEAKAQAERLGARAAGSVSAKTDLVVA
GPGAGSKLKKAEELGVRVIDEAAWARIVAQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgttcatcagcctgctggaagaggtcttcgggtgaccagcgagctgagcgaa
gcgcaggccgccaaccgtctgatgcggttggcgaaggagattgcgcggcacgacaagctg
tatcacgaccaagacgcgcccgagatcagcgatgccgactatgacgcgctggtccgcgag
aaccgcgagctagaggcgcgatacccgcatctcgtacgcgccgactctccctcgaggcgg
ctcggcgcttcgcccaccggcccgctggcgaaggtaccgcatgcgcggccgatgctcagc
ctcgacaatgccttttcggcggaggaagtacatgaattcgtcgcgcgcgtgcggcgtttc
ctcaacctcgccgacgacgagccaatcgcgctcaccgccgagcccaagatcgacggcctg
tcctgctcgcttcgctacgagcatggccagttggcgctcgccgcgacgcgcggggacgga
gcggtgggtgaggacgtcacgcccaacgtccgtactatcggcgacattccgcaggcgatc
agcggcgcgcccgacgtgcttgaggtgcgcggtgaggtctacatgtccaaggccgacttt
gccgcgctcaaccagcggcaggaggcaagcggcggcaagatcttcgccaacccccgcaac
gccgccgcgggctcgttgcggcaaaaggacccggcgatcaccgcggcgcgtccgctgtgc
ttcctcgcccacggttggggcgaattgagcgagccattggcgatgcttcagctgctggcg
atgcggaagatcgaatccttcggctttcccgtcagcgacctgctgaagcgatgcgaaacg
atcgaagaggtcctcgaacattatgccgcgatcgagcaggcgcgcgcagacctgccctac
gatatcgacggcgtggtctataaggttggccggctcgattggcaggagcggctgggcttc
gtcggccgcgcgccgcgctggggtctcgcgcacaaattccccgcggagaaagccgaaacc
acgctcgaagcgatcgacattcaggtcgggcgcaccggcaagctgactcccgtcggccgg
ctcaagcccgtcggcgtggggggcgtgatcgtcgccaacgtcacccttcacaatcgcgac
gagattgcgcgactggccttgcgcgtcggcgaccgcgtgcgcatccagcgcgccggcgac
gtcatcccgcaggtcgtcgagaacctcacgcgcgatgtgaagcggcccgcttatgtcttt
cctgaccattgcccccaatgcgattccgaagcggtggcggcggagggtgaggtcgacgtc
cgctgcactggcgggcttatttgtccagcacaacgtttcgaacggctgaaacatttcgta
tcgcgcggtgcgctcgatatcgaggggctgggcgaaaagagcatcgccgagttcatcgcg
ctcggctggcttggctcacccgccgacatctttcgcctgcgcgcgcatcgcggcgacttg
ctcggccgcgaaggctggaaggagaagtcggtcgacaatctgctcgccgcaatcgaggcc
aagcgcgcgcccgacccggtgcggttcctgttcggcctcggcatccgccacgtcggggtg
gtgaccgccaaggacctgctcaaatgtttcgcgacggtggaggaattgcgccgcgtcgcc
acctcgcccgatgcgcaggccgagcttgcggcggtcgaaggcgtcggcccggtcgtcgcc
gaggcgctggtcgatttcttccacgaggatcacaaccgcgcggtgctcgacgacctcctg
tccgaagtcacgccgctacccttcgtcagcaacgcacgccagaccgaatggagcggcaag
accatcgtcttcaccggcacactcgaaaccatgagccgcgacgaggccaaggcgcaggcc
gagcgcctgggcgcgcgagcggcaggttcggtcagcgcgaaaaccgacctggttgtggca
gggccgggcgccggatcgaagctcaagaaagccgaggaacttggcgtccgcgtgatcgac
gaagcggcgtgggcgcggatcgtcgcccaatcctag
DBGET
integrated database retrieval system
