Streptomyces lividans: SLIV_11035
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Entry
SLIV_11035 CDS
T03222
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slv
Streptomyces lividans
Pathway
slv03030
DNA replication
slv03410
Base excision repair
slv03420
Nucleotide excision repair
slv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLIV_11035 (ligA1)
03410 Base excision repair
SLIV_11035 (ligA1)
03420 Nucleotide excision repair
SLIV_11035 (ligA1)
03430 Mismatch repair
SLIV_11035 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slv03032
]
SLIV_11035 (ligA1)
03400 DNA repair and recombination proteins [BR:
slv03400
]
SLIV_11035 (ligA1)
Enzymes [BR:
slv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLIV_11035 (ligA1)
DNA replication proteins [BR:
slv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLIV_11035 (ligA1)
DNA repair and recombination proteins [BR:
slv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLIV_11035 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLIV_11035 (ligA1)
MMR (mismatch excision repair)
DNA ligase
SLIV_11035 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLIV_11035 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AIJ13201
LinkDB
All DBs
Position
complement(2539737..2541944)
Genome browser
AA seq
735 aa
AA seq
DB search
MAGDKQGDKQAETTSVPAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEE
LEERHPELRTPESPTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE
QEYHFLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVP
DLVEIRGEVYFPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVH
GIGTLEGYSGLTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEID
GVVVKVDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AECPECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVVAAALTG
PLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFANKEGEP
KKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELAST
DGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEGPRPLEGLTVVVTGTLE
NFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLE
QGPEAAADVALSAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagggcgacaagcaggcggagacgacgagtgtgcccgccgaggcg
cgggagcggcacgcgcagctcgccgagcagatcgaggagcaccgcttccggtactacgtg
aacgacgcgcccgtcgtcagcgacgcggagttcgaccggctgctgcgcaccctggaggag
ctggaggagcggcacccggagctgcgcacccccgagtccccgacccagaaggtcgccggc
gcctacgcgaccgagttcacggccgtgcagcaccccacgcggatgctctccctggacaac
accttcaacgacgacgagctggccgcctggttcgagcgcatcgcccgggagctgggcgag
caggagtaccacttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctac
gagcgcggccgcctcgtccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acgcccaatgtccgcaccatcgccgagatccccgaccgcctggcgggcgacaaggtcccc
gacctggtggagatccggggcgaggtctacttcccgatggagaagttccaggagctcaac
gcccggttgaacgaggcgggggacaagcccttcgccaacgcgcgcaacgcggcggccggt
tcgctgcgccagaaggacccgcgcgtcaccgcctcccgcccgctgcacatggtggtccac
ggcatcggcaccctggagggctactcgggcctgacccgcctctcccaggcgtacgacctg
ctgaaggcctggggcctgcccacctccccgcacaaccgggtggtcgacggcctggacggc
gtacgcgagttcatcgcgtactacggcgagaaccggcactccgtcgcgcacgagatcgac
ggcgtcgtcgtcaaggtcgacgagatccgcctccagggccggctcggctccaccgcccgc
gcgccccgctgggccatcgcctacaagtacgcgccggaagaggtcaacaccaagctggtc
gacatcaaggtgggcgtcggccgcaccggccgcgtcacgccgtatgcgcaggtcgagccg
gtcacggtggccggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaag
gccaagggcgtgctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccg
gagatcctcgggccggtcgccgacctcagggacggcagcgagcgggagttcgtgatgccg
gcggagtgccccgagtgcgggacgccgctgaaggcgatgaaggagggcgacatcgacctc
cgctgccccaacgcccgcgcctgtccggcccagttgcgcgagcgggtcgcctacctcgcg
ggccgggagtgcctggacatcgagcacttcggcggggtcgtggcggccgcgctgaccggg
ccgctggagccgtccgagccgcccctggtggacgagggcgacctcttcgacctcaccgtc
gagaagctgctgcccatcaaggcgtacgtcctggaccccgacagcgggctgcccaagcgc
gaccccaagaccggcgaggagaagatcgccacggtcttcgccaacaaggagggcgagccg
aagaagaacaccctcgcgctgctccagcacatcgaggaggccaagacccgcccgctggcc
cgcttcatcaacggcctctccatccggtacgtcgggccggtcgccgcccaggccctcgcc
cgcgagttccgctccatcgaccgcatcgagcaggccaccgaggaggagcttgcgagcacg
gacggggtgggcggcaccatcgccaccgccgtcaaggagtggttcgcggtggactggcac
cgcgagatcgtgcgcaagtggaaggcggccggggtcccgttggaggaccggtcgacgggg
gaggacgaagggccgcgcccgctcgaaggactcaccgtcgtcgtcaccggcaccctggag
aacttcacccgggacggcgccaaggaagccctccagagccggggcgcgaaagtgaccgga
tcggtgtccaagaagacgtcgttcgtcgtggtcggtgacaaccccggttcgaagtacgac
aaggcgatgcaactgaaggtgccggttctgaacgaggacggtttcgccgttctgctcgaa
caaggacccgaagcggcggcggatgtcgcgctttcggctgaggaatag
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