Parathermosynechococcus lividus: BRW62_01250
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Entry
BRW62_01250 CDS
T05303
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slw
Parathermosynechococcus lividus
Pathway
slw03030
DNA replication
slw03410
Base excision repair
slw03420
Nucleotide excision repair
slw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRW62_01250 (ligA)
03410 Base excision repair
BRW62_01250 (ligA)
03420 Nucleotide excision repair
BRW62_01250 (ligA)
03430 Mismatch repair
BRW62_01250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slw03032
]
BRW62_01250 (ligA)
03400 DNA repair and recombination proteins [BR:
slw03400
]
BRW62_01250 (ligA)
Enzymes [BR:
slw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRW62_01250 (ligA)
DNA replication proteins [BR:
slw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRW62_01250 (ligA)
DNA repair and recombination proteins [BR:
slw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRW62_01250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRW62_01250 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRW62_01250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRW62_01250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ATS17596
UniProt:
A0A2D2PZC0
LinkDB
All DBs
Position
248631..250736
Genome browser
AA seq
701 aa
AA seq
DB search
MMPRETVASRIQQLRHLLQKASYAYYALDRPIMEDAVYDQLYRELQDLEAAHPEYITADS
PTQRVGEAPVSQFASVVHRIPLYSLENAFTLADMVAWQERWQRYWRNLTGDSPPAAAYIC
ELKMDGVALALTYENGLLVRGATRGDGTRGEEITSNVRTIRAIPLRLNLETPPAILEVRG
EAFLGLDRFHQLNQERQAQGEPPFANPRNAAAGTLRQLEPRVVAQRQLDFFAYALHLPDG
GVVPLDPQRQTYGQPQSQRHVLTALQQLGFRVNPEYAECPTLEAVQAYYNHWQTARHDLP
YLTDGIVVKLNDLSLQRQLGFTQKFPRGCIAWKYEPEQAITDVVAITVQVGRTGALTPVA
ELEPVLLAGTTVSRATLHNGDRIAELDLHIGDKVVIHKAGEIIPEIVRVFPELRPETAEP
FQMPSHCPECHSPVVRPADEVVTRCVNPQCPAIVRGQILHWASRDALDIQGLGEKLVQQL
VASQRVRTAADLYRLRLEDLVNLERMAAKSAQKLLQAIAQSKTQPWPRVLYGLGIRHVGS
VNAQLLAEAFPDVDQLACAPHEAICAIHGIGPEIGQAVYDWFRTPAHQALIQDLKTLGLQ
LAQHPAITPDQPLRGKRFVITGTLPTLSRNQAKQLIQDHGGKVSESVSAQTDYVVVGENA
GSKLRRAEALGIPCLNETELIEMCHSAKIRGSTEPLARRIF
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaagggaaacagttgccagccgcattcagcagttgcgacatctgctccaaaag
gcgagctacgcttactatgccctcgatcgccccattatggaggatgcggtttacgaccaa
ctctaccgcgaactacaggatctggaggcagcgcatcccgagtatattaccgccgatagc
cccacccagcgggtcggggaagcaccggtcagccagtttgccagtgtcgtgcaccgcatt
cccctctatagtcttgaaaatgcctttaccctagcggacatggtggcgtggcaggagcgg
tggcaacgctattggcgtaatttaaccggagattccccgccagcggcggcgtatatctgt
gagctaaagatggatggggttgcccttgccttgacctatgagaacggtctgctggtgcga
ggggcaacccgtggggatggcacccgcggcgaagagattaccagtaatgtgcgaacaatc
cgtgcgattccgctgcgcctcaaccttgagaccccaccggccatccttgaagtccgggga
gaagcgtttttaggccttgacagatttcatcaactcaatcaagagcggcaagcccaagga
gaaccgccctttgctaacccccgtaatgcggcggctggcaccctacgccaattagagcca
cgggtagtcgcgcaacggcagctcgatttttttgcctatgccctgcatctgcccgatggc
ggggttgtgcccctagacccgcagcgccagacctacggccaaccccaatctcaacgccat
gtcttaacagcgttacaacaactggggtttcgggttaatcctgagtatgctgagtgccct
accctagaagcagtgcaagcctactacaaccattggcaaaccgctcgccatgacttgccc
tacctcaccgatggcattgttgtgaagctcaacgacctgagcctacagcggcagttgggc
tttactcaaaaattcccccggggctgcattgcttggaagtacgaaccggaacaggcgatt
accgatgtggtggccattacggtgcaggtgggacgcacgggtgccctgactcctgtggct
gaacttgagccagtgctgctagcggggacgacggtttcgcgggcaacgctgcacaatggc
gatcgcatcgcagaattagatttacacattggcgacaaagtggtcatccacaaagcgggg
gaaattattccagaaattgtgcgtgtgttcccagaactacggcctgagacggctgaaccc
tttcagatgcctagccattgcccagagtgccactccccagtggtgcggcctgccgatgaa
gtggtgacccgctgcgtcaatccccagtgtcccgcaattgtgcgggggcagattcttcac
tgggccagtcgcgatgccctagatattcaagggctgggggaaaaattggtacagcagttg
gtggccagccaacgggtgcggactgccgctgacctctaccgccttaggctcgaagacctc
gttaacctagagcgcatggcagccaagtcggctcagaaacttctgcaggcgatcgcccag
tccaaaacccaaccgtggccgcgggtgctctacggacttgggattcgccatgtgggcagc
gtcaatgcccaactgctagcagaggcatttcccgatgtggatcaacttgcttgtgccccc
cacgaggccatctgcgccattcacgggattggcccagaaattggccaagcggtgtacgat
tggtttcgcacccccgctcaccaagccctgattcaagacctgaaaaccttaggcttgcaa
ttggcacagcatccagctatcaccccagaccaaccactacggggcaagcgatttgtgatc
acaggcacactgccaaccctcagccgcaaccaggccaaacaactgatccaagaccacggc
ggcaaagtcagcgagagcgtcagtgcccaaacggactacgtggtggttggcgaaaacgca
ggcagtaaactccgtcgcgccgaagcactgggcattccctgcctcaatgaaacagaactt
atagaaatgtgtcattcagcaaaaatccgtgggagtacggaaccacttgcccgcagaatc
ttttag
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