Streptomyces lavendulae subsp. lavendulae: SLAV_12305
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Entry
SLAV_12305 CDS
T05314
Symbol
ligA2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Pathway
slx03030
DNA replication
slx03410
Base excision repair
slx03420
Nucleotide excision repair
slx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLAV_12305 (ligA2)
03410 Base excision repair
SLAV_12305 (ligA2)
03420 Nucleotide excision repair
SLAV_12305 (ligA2)
03430 Mismatch repair
SLAV_12305 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slx03032
]
SLAV_12305 (ligA2)
03400 DNA repair and recombination proteins [BR:
slx03400
]
SLAV_12305 (ligA2)
Enzymes [BR:
slx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLAV_12305 (ligA2)
DNA replication proteins [BR:
slx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLAV_12305 (ligA2)
DNA repair and recombination proteins [BR:
slx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLAV_12305 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLAV_12305 (ligA2)
MMR (mismatch excision repair)
DNA ligase
SLAV_12305 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLAV_12305 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
RNA_lig_T4_1
zf-IS66
HMBD
Motif
Other DBs
NCBI-ProteinID:
ATZ24320
UniProt:
A0A2K8PDW7
LinkDB
All DBs
Position
complement(2922869..2925073)
Genome browser
AA seq
734 aa
AA seq
DB search
MAAEQQDTAVPTAVREQHGLLAEQVEEHRFRYYVSDQPVVSDAEFDRLLRSLEALEEQYP
ELRTPDSPTQKVAGAYETDFASVEHRERMLSLDNAFDDEELAAWAERVARDVNTPDFHYL
CELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIR
GEVFFPMEKFEELNARLVEAQGKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGARE
GFAIERQSQAYELLHEWGLPTARHNKVVSSLAEVREFIAYFGENRHSVEHEIDGVVVKLD
EIALQGRLGSTARAPRWAIAWKYAPEEVNSKLIDIKVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPEQCPECG
TALRPMKEGDIDVRCPNGQSCPAQLRERLYYLAGRQSLDIENFGIVAAAALTGPLEPAEP
PLRDEGDLFGLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKIVTVFANQKGEPKKNALAM
LENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATEEELTATEGVGAII
AASLKEWFAVEWHQEILRKWREAGVRMEEEGSAEEEGPRPLEGLTVVVTGTLQSHTRDGA
KEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLGLAVLDDAGFAVLLEQGPDAAR
EAALPAEGAGAAQE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaacagcaggacacggcggtaccgacggcggtgcgcgagcagcacgggctg
ctcgccgagcaggtcgaggagcaccgcttccggtactacgtcagcgaccagccggtcgtc
agcgacgccgagttcgaccggctgctgcgctcgctggaggccctggaggagcagtacccc
gagctgcgcacgcccgactcgcccacccagaaggtggccggggcgtacgagacggacttc
gcctccgtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctggccgcctgggccgagcgcgtggcccgcgacgtgaacaccccggacttccactacctg
tgcgagctcaaggtggacggcctcgccgtcaacctcacctacgagaacggccgcctgacc
cgggccgccacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtccgcacc
atcgccgagatcccggaccggctcaagggagaccggatcccggccctcgtcgagatccgc
ggcgaggtcttcttcccgatggagaagttcgaggagctcaacgcccggctcgtggaggcc
cagggcaagcccttcgccaacccgcgcaacgcggccgccggttcgctgcgccagaaggac
ccgaaggtcaccgcgagccgcccgctgcacatggtggtgcacggcatcggcgcccgcgag
ggcttcgccatcgagcgccagtcccaggcgtacgagctgctccacgagtggggcctgccc
accgcccggcacaacaaggtcgtctcctcgctcgccgaagtccgcgagttcatcgcgtac
ttcggggagaaccggcactcggtggaacacgagatcgacggcgtggtcgtcaagctcgac
gagatcgccctccagggccggctcggctccaccgcccgcgccccgcgctgggcgatcgcc
tggaagtacgccccggaagaggtcaacagcaagctgatcgacatcaaggtcggggtcggc
cgcaccgggcgcgtcaccccgtacgcgcaggtggagccggtcacggtggcgggctccgag
gtggagttcgcgaccctgcacaaccaggaggtcgtcaaggccaagggcgtgctcatcggg
gacaccgtcgtgctccgcaaggcgggagacgtcatccccgagatcctgggcccggtggtg
gacctgcgcgacggcagcgagcgggagttcgtgatgcccgagcagtgccccgagtgcggg
acggcgctgcggccgatgaaggagggggacatcgacgtccgctgccccaacggccagtcc
tgcccggcgcagttgcgcgagcggctctactacctcgccggcagacagagcctggacatc
gagaacttcggcatcgtcgcggccgccgcgctcaccggcccgctggagcccgccgagccg
ccgctgcgcgacgagggcgacctcttcggcctcaccatcgagcagctgctgcccatcaag
gcgtacgtcctcgaccaggacagcgggctgcccaagcgggacccgaagacgggcgaggag
aagatcgtcacggtcttcgccaaccagaagggcgagcccaagaagaacgccctggccatg
ctggagaacatcgcggcggccaaggagcgcccgctcgcccgcgtcatcaacggcctgtcg
atccggcacgtcggcccggtcgcggcggaggccctggcccgggagttccggtcgatcgag
cgcatcgagcaggccaccgaggaggagctgaccgccaccgagggcgtcggggcgatcatc
gccgcctccctcaaggagtggttcgccgtcgagtggcaccaggagatcctgcgcaagtgg
cgggaggccggtgtccggatggaagaggaaggttccgccgaggaggagggcccgcgtccg
ctggaggggctgaccgtggtcgtcaccggcactctgcagagccacacccgtgacggcgcc
aaggaggccctgcagagccggggcgccaaggtgaccggatcggtgtcgaagaagacctcc
ttcgtcgtggtcggggacaatcccggctccaagtacgacaaggccatgcagctggggctg
gccgtcctcgacgacgcgggcttcgccgtcctgctggagcagggcccggacgcggcccgc
gaggcggcgctgccggccgagggcgcgggcgcggcacaggagtag
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integrated database retrieval system
