Streptomyces lavendulae subsp. lavendulae: SLAV_20640
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Entry
SLAV_20640 CDS
T05314
Symbol
pdg
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Pathway
slx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SLAV_20640 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slx03400
]
SLAV_20640 (pdg)
Enzymes [BR:
slx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SLAV_20640 (pdg)
DNA repair and recombination proteins [BR:
slx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SLAV_20640 (pdg)
Prokaryotic type
SLAV_20640 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
ATZ25950
UniProt:
A0A2K8PIL6
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All DBs
Position
4647406..4648449
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AA seq
347 aa
AA seq
DB search
MSNKPVRAQAKGSAGVTAAQNSAVGEQAPEEASGTARPAPEGKGSAKKPPGAPARATAGK
TASKTASKTVNGTPAASRVPAPARSAGKGRAESRLAMVRRARRINRELADVYPYAHPELD
FRNPFELLVATVLSAQTTDLRVNQTTPALFAAYPTPEDMAGAVPEELEELIRPTGFFRMK
AKSLMGLSQALRDRFDGEVPGRLEDLVTLPGVGRKTANVVLGNVFGVPGITVDTHFGRLA
RRFKWTEQEDPEKVEAEICAIFPKSEWTMLSHRVVFHGRRICHARNPACGACPIAPLCPA
YGEGETDPEKAKKLLKYEKGGYPGQRLSPPPDYPGLPASPLGARTEP
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
gtgtccaataagccggtgagagcacaggccaaggggtccgcgggagtgacggcggcccaa
aattcagccgtgggcgaacaagcccccgaggaggcgtccggcacggcccggccggccccc
gagggcaaaggttcggccaagaaaccgccgggcgcgccggcgcgcgcgaccgcggggaag
accgcttcgaagacagcctcgaagaccgtgaacggcaccccggcggcctcccgggtgccc
gcccccgcccggagcgccgggaagggcagggccgaatcccggctggccatggtccggcgg
gcccgccgcatcaaccgggaactggccgacgtgtacccgtacgcccatccggagctggac
ttccgcaatcccttcgagctcctggtcgccaccgtcctgtcggcgcagaccaccgacctc
cgcgtgaaccagacgaccccggccctcttcgccgcctacccgacccccgaggacatggcc
ggggcggtcccggaggaactggaggagctgatccggccgaccgggttcttccggatgaag
gccaagtccctgatgggcctctcgcaggccctgcgcgaccgcttcgacggcgaggtgccc
ggccggctcgaagacctggtcaccctgcccggcgtgggccgcaagacggcgaacgtggtc
ctcggcaacgtcttcggggtccccgggatcaccgtcgacacccacttcggccgcctcgcc
cgccgcttcaagtggaccgagcaggaggaccccgagaaggtcgaggcggagatctgcgcg
atcttccccaagagcgagtggacgatgctctcgcaccgcgtcgtcttccacggccgccgc
atctgccacgcccgcaaccccgcctgcggcgcctgccccatcgccccgctctgcccagcc
tacggggagggcgagacggacccggagaaggcgaagaagctgctgaagtacgagaagggc
ggctacccgggccagcgcctgtcgccgcccccggactacccgggcctccccgcctcccct
ttgggagcccgtacggagccctga
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