Solanum lycopersicum (tomato): 101251601
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Entry
101251601 CDS
T02665
Name
(RefSeq) ATP-dependent helicase rhp16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101251601
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
101251601
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
DEAD
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
Prok-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
101251601
NCBI-ProteinID:
XP_010323837
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Position
7:63151619..63160613
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AA seq
824 aa
AA seq
DB search
MDVVTEKEWEYRALKARIEERKKDRKKKQEDRPTLMWETWEETYDKWLVKHFADDLDNQN
ELLCETVEPSSDMIVPLFRYQKEWLFWALKQEESSSKGGILADEMGMGKTIQAIALVLAK
RELGKTISKPSLLSSSSSTNKQEPSAVKGTLILCPMVAVLQWVTEINRCTIEGSNKILVY
HGSNRRKLSRDIEEYDFVITTYSTVEAEYRKFVMQPKQKCEWCGKAYYEEKLPIHQKSFC
GPDGVKTAKQSKKQRKKLKLDEELLMQKTDSTESETYLQITDFMESETNVQEEGSTAETD
MKKTGRRKYMKRSSMAEEGKNDGSMDTSSSVNQDLPQRKSILHSVKWDRIILDEAHYVKD
RRCNTTKATLSLKSSYKWALSGTPIQNLVGELYSLVRFLQIVPYSFYFCKDCDCRTLDYS
STSECPQCPHKSVRHFCFWNRYIATPIKREGSYGSGRDAMFLLKHKILKSILLRRSKKGR
AADLALPLKIVTLRKDSLDVIEEDYYTSLYNKSQAQFNTYVKGGTVMNNYAHIFELLTRL
RQAVDHPYLVVYSSTALAKMANSGNVEQPCGLCHDAVEDPAVTSCMHVFCKTCLIDFAAS
ARQVPCPLCSELLTIDFTVNTDKVDQNSKQTLKGFRSSSILNRIQLDDFQSSTKIDALRE
EIRFMIERDGSAKGIVFSQFTSFLDLIHYSLQKSGINCVQLVGSMSIDARAAAVTKFTED
SDCRIFLMSLKAGSVALNLTVASQVFMMDPWWNPAVERQAQDRIHRIGQYKPVRIVRFVI
ENTVEEKILKLQEKKELVFEGTIGGSSEAFAKLTEADLKFLFTT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagttactgaaaaagagtgggagtatcgtgcattgaaggcaaggatagaagaa
aggaaaaaagaccgcaagaagaaacaagaggacagaccaactttaatgtgggaaacttgg
gaagaaacatatgacaaatggcttgtgaaacacttcgcagatgatttggataatcagaat
gagttattgtgtgaaacggtggagccatcatcagatatgattgtgccattgttcaggtac
cagaaggagtggttgttttgggctcttaagcaagaagaatcttcatccaaagggggtatt
cttgctgatgagatgggaatggggaagactatccaagcgatagcacttgtgcttgctaaa
agggaattagggaaaacaattagcaaacctagtttattgtcatcttcatccagtactaat
aagcaggaaccctcagcagtaaaaggcactcttatcttatgccctatggttgctgtcctt
cagtgggttactgagatcaatcgatgcaccattgaaggtagcaacaaaattcttgtgtat
catggttctaacagaaggaaacttagccgcgatattgaagaatatgattttgtcatcacc
acatactccactgttgaggctgaatataggaaatttgtcatgcagccaaaacaaaagtgc
gagtggtgtggcaaagcatattatgaagaaaagttgcccattcaccagaagagtttttgt
ggaccagatggtgttaaaactgccaagcagtcaaagaagcagaggaaaaagttaaaactt
gacgaggaattgttgatgcagaaaacagattctactgagtcagagacttatttgcagata
acagattttatggagtcagagacgaatgtgcaggaagaaggttctaccgcagagactgat
atgaagaaaacgggtcgtagaaagtacatgaagcgtagtagcatggcagaagaaggaaaa
aatgatggttctatggatacttcatccagtgtaaatcaagatttgccacagaggaagtca
attttgcattcagtgaagtgggatcgcatcatcttggatgaggctcattatgtaaaagat
aggcgctgcaacacgacaaaagctactcttagtttgaaatcttcttataagtgggcctta
agtggtactccgattcagaatcttgttggagaattatattcacttgtccgtttcctacaa
atagtaccctactctttttacttttgcaaggactgtgattgcagaacacttgactacagc
tctacatccgagtgcccacaatgcccccacaaatcagtacggcacttttgcttttggaac
agatacattgctacacctataaaacgtgaaggaagctatgggagtggtagagatgcgatg
ttccttttgaagcataaaattctaaaaagcatcctactaaggcgtagtaaaaagggaaga
gctgctgatcttgctcttcctcttaaaattgttactttgagaaaagattctttggatgtc
atagaagaagactactacacgtcattgtacaataaaagtcaggcacagtttaatacttat
gttaaaggtggaacagtgatgaacaactatgcacacatttttgagctgcttacacgccta
cggcaggcagttgatcatccttatcttgtggtgtactcgagtactgctttggctaaaatg
gcaaactctggaaatgttgagcaaccttgtggcttatgtcatgatgcagtagaagatcca
gctgttacttcttgcatgcatgtcttttgcaagacgtgtttgatagactttgctgcaagt
gctagacaagtgccatgccctctgtgttctgaactacttacaattgacttcactgtaaat
actgataaggtggatcagaattctaaacagactctcaaagggtttagatcctcaagtata
ctgaacagaattcagctagacgatttccagtccagcactaaaatagatgctttgagggaa
gaaattaggttcatgattgaaagagatggttctgcaaaaggaatagttttcagccagttc
acatcgtttttggatttgatacactattctcttcagaagtcgggcatcaattgtgttcaa
ttagtcggatctatgtctattgatgcaagagctgcagcagttaccaaatttactgaggat
tcagattgcaggatatttcttatgagcttaaaagctggaagtgttgcactcaatcttact
gttgcatcacaggttttcatgatggatccttggtggaatcctgctgtggagcgccaagca
caagaccgaattcatcgaatagggcaatataaacctgtcaggattgtgagatttgtgatt
gaaaatacagttgaagagaagatcttaaagttacaggagaagaaggaacttgtttttgaa
gggacaattggtggctcttcagaggcctttgcaaagttaactgaagcagacttgaaattc
ttgtttacaacttaa
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