Solanum lycopersicum (tomato): 101252197
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Entry
101252197 CDS
T02665
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101252197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101252197
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101252197
Complex C
U5 SnRNP specific factors
101252197
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
SOI
Roc
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
101252197
NCBI-ProteinID:
XP_004242711
UniProt:
A0A3Q7I0H0
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All DBs
Position
7:3520707..3527212
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AA seq
987 aa
AA seq
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MDDSLYDEFGNYIGPEIESDQESDREEEDDELPDRSDDERAVSDDEQPGASNGWLATQDD
IDMDNQVVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPALVRNVALVGHIHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMTAALRLADGAVLIV
DAVEGVMVNTERAIRHAILERIPIVLVINKVDRLITELKLPPKDAYFKLKHIVETVNSQI
TAASSTAGNAQVIDPALGNVCFASATAGWSFTLQSFAKLYVKLHGIAFDANKFASRLWGD
FYFDPDTRSFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
NCDSAGPLMVNVTKLYPKPDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNLEFDEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
IDWPRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgagtttgggaactatattggtcctgaaatagagtctgat
caggaaagtgatagggaagaggaagacgatgagctgcctgataggagtgatgatgagaga
gctgtatctgatgatgagcagcctggtgcttcaaatggatggcttgccactcaagatgat
attgacatggataaccaagttgttcttgctgaagacaagaaatactacccaactgctgaa
gaggtttatggtgaagaggttgaaacgttggtcatggatgaagatgaacagccacttgaa
atgccaataattaaaccagtgaagaatcttaagtttgaacttggggtgaaggattcgtcc
acttatgtatcgactcagtttctcttaggtctgatgtcaaacccagcattggttagaaat
gttgctctagtgggacacatacatcacgggaagactttgtttatggatatgctggtggaa
caaacacaccatatatctacgtttgatcagaatagtgagaagcatatgaggtatacagac
acaagaatagatgagcaagagaggaggatatcaattaagtctgtccctatgtcactagtc
ttggaagacagcaattcaaagtcttacctgtgtaacattatggatgctcccggccatgtc
aacttctccgatgaaatgactgctgctttaagacttgctgatggggcagttttgattgtt
gatgcagttgaaggagtgatggtaaatacagaaagggccattaggcatgcgattctagaa
cgtattcccattgttcttgtaatcaacaaggttgatagattgataactgagcttaagttg
cccccgaaggacgcctacttcaaactaaagcacatagttgaaactgtcaacagtcaaatt
acagctgcctcgtccaccgctggaaatgcacaagtaattgatcctgcattagggaatgtc
tgctttgcaagtgcaacagcaggatggtcattcactctgcagtcatttgccaaactgtat
gttaagcttcacggaattgcatttgatgcaaacaagtttgcttcgcggctttggggggac
ttctactttgatcctgatacaagaagtttcaagaagaaacctcctgcaagtggggttgaa
agatcttttgttcagtttgtgcttgaacctctttacaagatttatagccaagtgatcgga
gagcacaagaagagtgttgaagcaaccctagcggaacttggggtgacactaagcaatgca
gcttatcgtctaaatgtaaggcctctgctgaggctggcttgcagtgctgtatttggaact
gccactgggtttactgacatgttggttcatcacatcccttctgctaaagctgctgcagct
aggaaagtggaacacatatacacgggtccaaaggattcagcaatttacaaagcaatggaa
aattgtgattctgctggcccgttgatggttaatgtgacgaagctgtatccgaaaccagat
tgtagtgttttcgatgcttttggtagggtttacagcggggaaataatgacagggcagacg
gtacgcgttcttggtgagggctattcacctgatgatgaagaggatatgactgtaaaagaa
gttacaaagctgtgggtatatcaagctagatacaggatccccataagtaaggctcctcca
ggtgcatgggttctgatcgaaggagtggatgcttcaatcatgaaaactgctactctttgt
aatctggaatttgatgaggatgtatacatatttcgccctcttcagtttaatactcttcct
gtggtgaaaacagctactgaacctttgaatcctagcgaattgcccaaaatggtggagggg
cttaggaaaatcagcaagagttatcctcttgcaatcacaaaggttgaagagtcgggtgaa
cacacgatattaggtactggtgaattgtacctagattctataatgaaggaccttagggag
ctttactccgaggtggaagtgaaggtggctgatccagttgtctcattctgtgaaactgtg
gtggagtcgtcttcaatgaaatgttttgctgaaacacctaacaagaaaaataaaatcact
atgattgctgaacctctggagagagggcttgctgaggacatcgagaacggtgttgtgagc
atcgattggcctagaaagaaactaggtgaatttttccaaaccaaatatgactgggatctt
cttgctgcacggtctatttgggcatttggacccgataagcagggacctaatatcttattg
gatgatacactctcaagtgaagtggacaagagcttgttgaatgctgttaaagattctatt
gttcaggggttccaatggggagctcgggaaggacccctttgcgatgagcccattagaaat
gttaaattcaagatcgttgatgcgaagattgcaccggagccgttgcatcgtggaacgggt
cagattattccaactgcacgacgtgtagcctactctgcttttcttatggcaacacccaga
cttatggaacctgtgtattatgtggagatccaaacgcccatggattgtctctctgctata
tacaccgtgttgtcacgtaggcgtggacacgttactgctgatgttcctcaacctggcacc
cctgcctacattgtcaaggcatttttacccgttatcgagtcctttggttttgaaacggac
ttgaggtatcacacccaagggcaggcgttttgtctttcagtatttgatcattgggctatt
gtccccggggatcctcttgacaagagcatcgttctacgaccactggagcctgctccaatc
caacatctggctcgtgagttcatggtgaagacaaggcgtagaaagggaatgagtgaagat
gtgagcatcaacaagttctttgatgaagctatgatggtggagcttgcgcagcaggatgct
gatcttcacctgcagatgatgtag
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