Solanum lycopersicum (tomato): 101253419
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Entry
101253419 CDS
T02665
Symbol
ABCI8
Name
(RefSeq) ABC transporter I family member 8
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101253419 (ABCI8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101253419 (ABCI8)
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101253419 (ABCI8)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
ORC-CDC6-like
AAA_28
NACHT
AAA
AAA_23
Arf
AAA_18
PduV-EutP
G-alpha
AAA_30
FtsK_SpoIIIE
SRP54
AAA_15
AAA_14
AAA_24
AAA_22
AAA_13
AAA_5
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
101253419
NCBI-ProteinID:
NP_001353548
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All DBs
Position
9:complement(61687545..61691405)
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AA seq
286 aa
AA seq
DB search
MAGESSSIQVNGMQFSYDFQSPIYFDFNLNVAPRSRCLLLGANGSGKTTLLKILAGKHMV
GGKDVVRVLNLSAFHDTHLVCSGDLAYLGESWSKNVGAVGDIPLQGDFSAEHMIFGVEGV
DPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLMDEVTVDLDVVARMD
LLDFFKEECEQRGATIVYATHIFDGLETWATDLVYIQEGVLKRTEKLPELPELKSSPNLL
SVVENWLRSETPIEKKKPAPAPAKAQKSSPFGSSPFQSSRHMSHYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaatcaagcagtattcaagtcaatggaatgcaattttcatatgattttcaa
agtcccatatatttcgatttcaatctcaatgttgctcccagatctcgatgtcttcttctc
ggtgcaaatggatcagggaaaacgacccttttgaagatattggcgggaaaacatatggtc
ggtggaaaagatgtagtcagggtgctgaatttatcggcttttcatgatactcaccttgtt
tgtagtggtgatctcgcttaccttggagagtcttggagcaaaaatgttggtgctgttgga
gatattccacttcagggagatttttcagctgaacatatgatatttggagttgaaggagtg
gatccagttcggcgagaaaagttgattgagctgctggatattgatctgcagtggcgtatg
cacaaggtatctgatggtcagaggcgtagagtccaaatctgcatgggtctccttcacccc
tacaaggttcttttaatggatgaggtcaccgttgacttagatgttgttgcgaggatggat
ttattggatttctttaaggaagaatgtgaacagagaggagctacaattgtctatgcaaca
catatatttgatggactggagacatgggcgactgatcttgtttacatccaagaaggagtt
ctgaagaggactgagaaattacccgagcttcctgagttgaagtcctcccctaatttgctt
tcagtagttgagaactggttgcgttctgagaccccgattgagaaaaagaaaccggctccc
gctccagcaaaagctcaaaagtcctctccttttggctcttctccatttcagtcatccaga
catatgtcacattatcgctga
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