Solanum lycopersicum (tomato): 101254010
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Entry
101254010 CDS
T02665
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101254010
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
101254010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-RING_5
Pol_BBD
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
101254010
NCBI-ProteinID:
XP_010324096
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All DBs
Position
7:63038862..63047705
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AA seq
1115 aa
AA seq
DB search
MDLRIPDERGEGTDADQRRRVKFWKDNREKVQKKRGSVLKWETVEEEMDEVILKNYSDNS
DNISLAETAEPPSDLILPLLRYQKEWLAWSIKQEESTFKGGILADEMGMGKTLQAIALVL
AQRDLKKATNGSSILLSSPGTSQELPTVKGTLFVCPLTGASQWLREIERCTTKESNKTLL
YHGTNRGKFTSNLEEYDFVITTYSTILADYMLIMSKQKSNNSKLCDDGSIDNSVSVGEDV
SRRKSILHSVKWDRIILDEAHHVKSISTTTTKAVLALESFYKWALTGTPLQNHIGELHVL
VRFLQVTPYAYYFCQNCNCSGLDLSSSDKCPQCHPQTCRRARHFLWWNKYIKKPLRMMGH
ENEGGDAMVLLKHKILKSIMLRRTKKERVADLSLPTKIVIIRKDSLDVDEFNYYKSLHNR
SRELIERYVEAGTLMNNYGHIFAMITRLRQAVDHRYLVMYSRKELVSGNKEVEDVEKLCD
LCHDAVEDPVVTSCSHVFCKACLIDVADSVEKIACPSCTKPLKFDFTANNDKGDSNSKPT
VKEFRSSSILNRIQLDKFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLIQYSL
NLSGINCVQLVGSMSIAARDAAINKFTEDSDCRILLMSLKAGAVALNLTVASNVFLMDPW
WNPAVEQQAQDRIHRIGQYKPVWIVRFVIENTIEENVIELQEKKKFLFEGTVGGSSEALG
KLTMEDLSKLLGTVPQFKTRLLARPETPSDLQNDFPALNHDLTLVSTSTGSLQAYCDADY
GLVLHQEVHHWLPISWKSKKQYTISRSSAEAEYMSLSSTASVMVDPTVASLEHSHPIYLH
ASDTPDGTCLKSSYKKGELAAQWERCNVVVLSWISSNVAQELLTTIVYASNANRVWDDFK
KRSDTFLKVIVPIVTQAYATVKYRKKISKARGSRDKDSNTGFKGYGDSQSNNNGDGHRFN
NFTHNQHADSGFKSYANQVGVDRQDFALTLTEKEYNDVRDLRHNNTSCAYVGDNSDCKVN
LAGNVSLSSDACDHRWIIDLGATNYITSSQQILAEFSSLSDQRSNTVQLPTGNGAHIVKT
GHYVIMGCYKGHCIKAAFHLINKTPTVVLQNALWF
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcgaattccagacgaaaggggtgaaggtacggatgcggatcaaagacgccgt
gtgaaattctggaaagacaatcgtgagaaagtacaaaagaaaaggggatcagttttgaaa
tgggagacagtggaagaagaaatggatgaagtcattcttaagaattattcagataattct
gataacatctcgcttgctgaaactgctgagccaccatcggatttgatcttgccgcttttg
aggtaccaaaaggagtggttggcttggtcaataaagcaagaagaatctacattcaagggg
ggtattcttgctgatgaaatgggaatggggaagacgcttcaagccatagcacttgtgctt
gctcaacgcgatttaaagaaagcaactaatggttccagtatattgttgtcttcacctggt
acttcccaggaactcccaacagtaaaaggaactctttttgtatgtcctttgacaggagca
tctcaatggcttcgagagattgaacgttgcacaactaaagaaagcaacaaaactcttctt
tatcatggcacaaacaggggaaaatttacatccaacctggaggagtatgattttgtcatt
acaacttactccactatcctggctgactatatgctcatcatgtcaaagcagaagagcaac
aactcaaaattgtgtgacgatggttctattgataattcggtcagtgttggtgaagatgtg
tccagaaggaagtcaattctgcattcagtgaagtgggatcgtatcattttggatgaggct
catcatgtcaaatctataagcaccaccaccacaaaagcggttcttgctttagaatctttt
tataagtgggccttaactggtacacccctgcaaaaccacattggagaattgcacgtactt
gtccgtttcttacaagttactccttatgcttattacttttgccaaaattgtaattgcagc
ggacttgatttaagctcctctgataaatgcccacagtgccatccccagacttgccgacgt
gcacgccacttcctctggtggaataaatatattaaaaaaccattaaggatgatgggacac
gagaatgaaggtggagatgctatggttttgttgaagcacaaaattctgaaaagcataatg
ctaagacgtaccaaaaaggaaagagttgctgatctttcacttcccacaaagattgttata
ataagaaaagattctttggatgtggatgaattcaactactacaagtcattgcacaataga
agccgagaactgatcgagagatatgtagaggctggaactctgatgaataactatggtcac
atttttgctatgatcacgcgcctacggcaggcagttgatcatcgttaccttgtaatgtac
tctagaaaagaattggttagtggaaataaagaggttgaagatgttgaaaaattatgtgac
ctatgtcatgatgcagtggaagatccagtagttacttcctgcagtcacgtgttttgcaag
gcatgtttgatagatgtagctgacagtgtggagaaaatagcatgcccttcatgtaccaaa
cccctcaaatttgacttcactgcaaataatgataagggggattctaattctaaacctact
gtcaaagagtttaggtcctcaagtatattgaacagaattcagcttgataaatttcaaacg
agcactaaaatagatgctttgagggaagaaattaggttcatggttgaaagggacggttct
gcaaaaggaatagtttttagccagttcacttcgtttttagatctgatacagtattctctt
aatctgtcgggcatcaattgtgttcaattagttggatcgatgtctattgccgcaagagat
gctgcaataaacaaattcactgaggattcagattgcaggatattacttatgagtttaaaa
gctggagctgttgctctcaatcttacagttgcatcaaatgttttcttaatggatccttgg
tggaatcctgcggtggagcagcaagcccaagatagaatccatcgaatagggcaatataaa
cctgtctggattgtgagatttgtgatagagaatacaattgaagagaacgtcatagagttg
caagaaaagaagaaatttctttttgaagggacagtcggtggttcttcagaggccttagga
aaactaacaatggaggacttgtcaaagctgctcgggactgtacctcaattcaagactcgc
cttctagcccggcccgagaccccatctgacctccagaatgattttccggccttaaaccat
gatttgactcttgtgtcaacatccacaggttcattgcaggcttattgtgatgcagactac
ggtcttgtgttacaccaggaagtccatcactggttaccaatctcatggaagtccaaaaaa
cagtacactatttctaggagttcagctgaggctgagtatatgagtctttcctcaacggcc
tctgttatggtagatccgacagtggcttctcttgaacactctcatcctatctaccttcat
gcatcagatacaccagatggaacttgtctaaagagttcgtataaaaaaggggaattggca
gctcaatgggaaagatgtaatgttgtggtgctctcatggatcagtagcaatgttgctcag
gaattactcactacaattgtgtatgcctcaaatgccaaccgtgtatgggacgacttcaag
aagagaagtgacaccttccttaaagtgattgttcctattgttactcaggcgtatgccact
gtaaaatacagaaagaaaatttcaaaagcaagaggaagcagggacaaggatagcaatact
ggattcaaaggttatggtgactctcaaagtaataacaatggtgacggtcataggttcaac
aatttcacccacaatcagcatgctgattcaggattcaaatcctatgcaaaccaagttggt
gttgatagacaggattttgcactcactctcactgagaaggaatacaatgatgtgagggat
ctcagacacaacaataccagttgtgcatatgttggtgataacagtgattgcaaagtaaat
ctggcaggtaatgtgtctttatcatctgatgcttgtgatcatcgttggataattgattta
ggtgccactaattacattacatcttctcaacaaattctagctgagttcagtagtctaagt
gatcagaggtccaatactgtacaacttccaacaggaaatggagctcatattgtaaaaact
gggcattatgttattatgggttgttataaggggcactgtataaaggctgcattccacttg
ataaacaagacacctacagtagtattgcaaaatgctctatggttctga
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