Solanum lycopersicum (tomato): 101254315
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Entry
101254315 CDS
T02665
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101254315
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
101254315
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
zf-RING_5
DEAD
zf-RING_2
zf_RING_Vps8_fungal
Prok-RING_4
zf-RING_Vps41
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
101254315
NCBI-ProteinID:
XP_025888010
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Position
7:63028495..63033517
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AA seq
687 aa
AA seq
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MKSFLRIYSDNSDNISLAETAEPPSDLILPLLRYQKEWLAWSIKQEESACKGGILADEMG
MGKTLQAIALVLAQRDLKKATNGSSILLSSPGTSQELPTVKGTLVVCPVIGASQWLREIE
RCTTKESNKTLLYHGTNRGKFTSNLEEYDFVITTYSTILADYRPKKSKQKSNNSKLCDDG
SIDNSVSVGEDVSRRKSILHSVKWDRIILDEAHHVKSISTTTTKVVLALESFYKWALTGT
PLQNHIGELYVLVRFLQVTPYAYYFCQNCNCSGLDLSSSDKCPQCHPQTCRRARHFLWWN
KYIEKPLRIMGHKNDGGDAMVFLKHKILKSIMLRRTKKERVVDLSLPTKTVIIRKDSLDV
DEFNYYKSLHNRSRELLKRYVEDGTLMNNYGHIFAMITRLRQAADHRYLVMYSRKELASG
NKEAEDVEKLCDLCHDAVEDLVVTSCRHVFCKACLIDVADSVEKIACPSCTKPLKFDFTA
NNDKGDSNSKPTVKEFRSSSILNRIQLDKFQTSTKIDALREEIRFMVERDGSAKGIVFSQ
FTSFLDLIQYSLNLSGINCVQLVGSMSIAARDAAVNKFTEDSDCRILLMSLKAGAVALNL
TVASNVFLMDPWWNPAVEQQAQDRIHRIGQYKPVWIVRFVIENTIEENVIELQEKKKFLF
EGTVGGSSEALGKLTIEDLSNLLERHF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcattcttaaggatttattcagataattctgataacatctcgcttgctgaaact
gctgagccaccatcggatttgatcttgccgcttttgaggtaccaaaaggaatggttggct
tggtcaataaagcaagaagaatctgcatgcaaggggggtattcttgctgatgaaatggga
atggggaagacgcttcaagccatagcacttgtgcttgctcaacgcgatttaaagaaagca
actaatggttccagtatattgttgtcttcacctggtacttcccaggaactcccaacagta
aaaggaactcttgttgtatgtcctgtgattggagcatctcaatggcttcgagagattgaa
cgttgcacaactaaagaaagcaacaaaactcttctttatcatggcacaaacaggggaaaa
tttacatccaacctggaggagtatgattttgtcattactacctactccactatcctggct
gactataggccaaaaaagtcaaagcagaagagcaacaactcaaaattgtgtgacgatggt
tctattgataattcggtcagtgttggtgaagatgtgtccagaaggaagtcaattctgcat
tcagtgaagtgggatcgtatcattttggatgaggctcatcatgtcaaatctataagcacc
accaccacaaaagtggttcttgctttagaatctttttataagtgggccttaactggtaca
cccctgcaaaaccacattggagaattgtacgtacttgtccgattcttacaagttactcct
tatgcttattacttttgccaaaattgtaattgcagcggacttgatttaagctcctctgat
aaatgcccacagtgccatccccagacttgccgacgtgcacgccacttcctctggtggaat
aaatatattgaaaaacctttaaggattatgggacacaagaatgacggtggagatgctatg
gtttttttgaagcacaaaattctgaaaagcataatgctaagacgtaccaaaaaggaaaga
gttgttgatctttcacttcccacaaagactgttataataagaaaagattctttggatgtg
gatgaatttaactactacaagtcattgcacaatagaagtcgagaactgctcaagagatat
gtagaggatggaactctgatgaataactatggtcacatttttgctatgatcacgcgccta
cggcaggcagctgatcatcgttaccttgtaatgtactctagaaaagaattggctagtgga
aacaaagaggctgaagatgttgaaaaattatgtgacctatgtcatgatgcagtggaagat
ctagtagttacttcctgcaggcacgtgttttgcaaggcatgtttgatagacgtagctgac
agtgtggagaaaatagcatgcccttcatgtaccaaacccctcaaatttgacttcactgca
aataatgataagggggattctaattctaaacctactgtcaaagagtttaggtcctcaagt
atattgaacagaattcagcttgataaatttcaaacgagcactaaaatagatgctttgagg
gaagaaattaggttcatggttgaaagggacggttctgcaaaaggaatagtttttagccag
ttcacttcgtttttagatctgatacagtattctcttaatctgtcgggcatcaattgtgtt
caattagttggatcgatgtctattgccgcaagagatgctgcagtaaacaaattcactgag
gattcagattgcaggatactacttatgagtttaaaagctggagctgttgctctcaatctt
acagttgcatcaaatgttttcttaatggatccttggtggaatcctgcggtggagcagcaa
gcccaagatagaatccatcgaatagggcaatataaacctgtctggattgtgagatttgtg
atagagaatacaattgaagagaacgtcatagagttgcaagaaaagaagaaatttcttttt
gaagggacagtcggtggttcttcagaggccttaggaaaactaacaatcgaggacttgtca
aacctgcttgagcgtcacttttga
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