Streptomyces avermitilis: SAVERM_2748
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Entry
SAVERM_2748 CDS
T00126
Symbol
ligA
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03030
DNA replication
sma03410
Base excision repair
sma03420
Nucleotide excision repair
sma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAVERM_2748 (ligA)
03410 Base excision repair
SAVERM_2748 (ligA)
03420 Nucleotide excision repair
SAVERM_2748 (ligA)
03430 Mismatch repair
SAVERM_2748 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sma03032
]
SAVERM_2748 (ligA)
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_2748 (ligA)
Enzymes [BR:
sma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAVERM_2748 (ligA)
DNA replication proteins [BR:
sma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAVERM_2748 (ligA)
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAVERM_2748 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAVERM_2748 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAVERM_2748 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAVERM_2748 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
DUF6782
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAC70459
UniProt:
Q82JK7
LinkDB
All DBs
Position
complement(3375523..3377715)
Genome browser
AA seq
730 aa
AA seq
DB search
MAGEQHAQPTSVPAEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEE
YPELRTPDSPTQKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSDYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVE
IRGEVYFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
RQGFDIDRLSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVMPAECPE
CGTPLAPAKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYVAAAALTKPLEPA
EPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFANQQGEPRKNAI
SMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATEEELKDTDGVGP
IVAAAVKQWFAEDWHREIIRKWKAAGVRMEDERSGEDEGPRPLEGLTVVVTGTLEHHTRD
GAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEAGFAVLLEQGPEA
AAEVALPTEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcacgcacagcccacatcggtacccgccgaggcacgggagaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggagttcgacaccctcctgcgctccctcgaggcactggaggaggag
taccccgagctgcgcacgcccgactcaccgacccagaaggtcgcgggcgggtacgagacg
gagttcacggccgtccagcaccgtgagcgcatgctctccctggacaacgccttcgacgac
ctggggctggccgcctgggccgagcgcgtcgccaaggacgtcggcacctccgactaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacgtatgagcacggccgc
ctcacgcgcgcggcgacccgcggcgacggccgcacgggcgaggacatcacgcccaacgtc
cgtacgatcgcggagattccggaccgtctcaagggcgaccgcatcccggacctcgtggag
atccgcggcgaggtctacttcccgatggagaagttcgaggagctcaacgcacgtctggtg
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggcgggttcactgcgccag
aaggacccgcgggtcaccgcgacccgcccgctgcacatggtcgtccacggcatcggcgcc
cggcagggcttcgacatcgaccggctctcccaggcgtacgagctgctgcgcgagtggggc
ctgccgaccacccggtacgccagagtggtcgacgacctcgacggcgtacgggagttcatc
gcgtactacggggagaaccgccactccgtggagcacgagatcgacggcgtggtcgtgaag
ctcgacgagatcccgctccagggccgcctcggctccacctcccgcgcgccgcgctgggcg
atcgcctggaagtacgcgcccgaggaggtcaacaccaagctcatcaacatccgcgtgggc
gtggggcgtacgggccgggtcacgccgtacgcgcaggtggagccggtcacggtcgcgggc
tcggaggtcgagttcgccaccctgcacaaccaggacgtcgtcaaggccaagggcgtcctc
atcggggacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggcccg
gtcgtcgacctgcgcgacggcaccgagcgcgcgttcgtgatgcccgccgagtgccccgag
tgcggtacgccgctggcgccggccaaggagggcgacgtcgacctgcgctgcccgaacgcg
cgcacgtgtccggcccagctgcgggagcggctcttctatctcgcgggccgcaagtcgctc
gacatcgagcagttcggatatgtcgcggcggcggccctcaccaagccgctggagcccgcc
gagccgccgctgctcgacgagggcgacctcttcgacctcaccatcgaacggctgctgccc
atcaaggcgtacgtcctcgaccaggacagcggcctgcccaagcgggacccgaagacgggc
gaggagaaggtcgccacggtcttcgccaaccagcagggcgagccgcggaagaacgcgatc
tcgatgctggacaacatcgcggccgccaaggagcgcccgctcgcccggatcctgaccggt
ctgtcgatccgccacgtcgggccggtcgcggccgaggcgctggcgcgcgcgttccgctcg
atcgaccgcatcgaccaggccaccgaggaggagctgaaggacaccgacggtgtcggcccg
atcgtcgccgccgcggtcaagcagtggttcgccgaggactggcaccgggagatcatccga
aagtggaaggccgccggcgtccgcatggaggacgagcgctccggagaggacgaggggccg
cgcccgctcgaaggactcacggtcgtcgtcaccggaacgctcgaacaccacacgcgggac
ggcgcgaaggaggccctgcagagccgcggggcgaaagtcaccggttcggtttcgaagaag
acgtctttcgttgtcgtaggtgacaatcctggatcgaaatacgacaaggcgatgcagctg
aaggttcccgttctgaacgaggccggattcgccgttctgctcgagcaaggaccggaagcc
gctgcggaagtcgcacttccgaccgaggagtag
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