Salinimonas marina: IT774_08755
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Entry
IT774_08755 CDS
T07441
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smaa
Salinimonas marina
Pathway
smaa03030
DNA replication
smaa03410
Base excision repair
smaa03420
Nucleotide excision repair
smaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IT774_08755 (ligA)
03410 Base excision repair
IT774_08755 (ligA)
03420 Nucleotide excision repair
IT774_08755 (ligA)
03430 Mismatch repair
IT774_08755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smaa03032
]
IT774_08755 (ligA)
03400 DNA repair and recombination proteins [BR:
smaa03400
]
IT774_08755 (ligA)
Enzymes [BR:
smaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IT774_08755 (ligA)
DNA replication proteins [BR:
smaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IT774_08755 (ligA)
DNA repair and recombination proteins [BR:
smaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IT774_08755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IT774_08755 (ligA)
MMR (mismatch excision repair)
DNA ligase
IT774_08755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IT774_08755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HTH_KIF26A_B_1st
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QPG04365
UniProt:
A0A7S9DV05
LinkDB
All DBs
Position
complement(1992209..1994245)
Genome browser
AA seq
678 aa
AA seq
DB search
MSKQSSSSEQQIEHLRDTLRQYNHEYYVLDAPTVPDAEYDRLMQQLIELEQANPSLITPD
SPSQKVGGAPLSAFEQVTHEVPMLSLDNAFDDASLLAFEKRLHDRLKSNEILYFSCEPKL
DGLAVSLLYENGQLVQAATRGDGQVGENITQNVRTITNIPHRLKGDTIPQRVEIRGEVFM
SKAGFEKLNSRQKANNAKVFANPRNAAAGSLRQLDPKITARRPLMFYTYSLGVVAPASLE
LPKTHSERLNLVQSWGMPLCPDIATAKGGQGCLEYYQHILRTREALPYDIDGVVFKVDSI
ALQQTLGFVAKAPRWAIAQKFPAQEEITRLISVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEINRLGVKVGDKVVIRRAGDVIPQVVSVVTSERPETAHDIEFPSQCPVCDSH
IEKLADEAVARCTGGLICAAQRKQALKHFASRKAMDIDGLGDKLIDQLVDAELVKSPADF
FDLNISELIGLERMAEKSASKLLGSLQDSKQTTLAKFLYALGIREVGESTANNLALHFKS
LEAVMQADVTALQEVSDIGHVVAQHISLFFREPHNTEIVEALLAAGIHWPEIEQPSGALP
LEGQTCVLTGSLSQMSRTDAKGRLQQLGAKVAGSVSANTQFLVAGDKAGSKLTKAQDLGV
TVWSEDDLIAFLQQHNVY
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaatcatcatccagcgaacagcaaattgaacatttgcgtgacacccttcgt
cagtacaatcatgagtattatgtacttgatgctcccaccgtgccggacgccgaatatgac
cggcttatgcagcagcttattgagcttgaacaagcaaatccatcactgataacgcctgac
tcgccgagccagaaagtgggtggggcgccactgagtgcgtttgagcaggtcacccacgaa
gtaccgatgttatcgctggataatgcctttgatgatgcctcgttactggccttcgaaaaa
cgtttgcacgaccggctaaaatccaacgaaatcttgtatttcagctgcgaaccaaaactt
gatgggttggcggtaagtttgctttatgaaaacggccaactggttcaggccgccacccgt
ggcgatggtcaggtgggagagaacattacccagaatgtgcgtactatcaccaatatacct
caccggcttaaaggcgacacgattccgcaacgggtagaaattcgtggcgaagtatttatg
tctaaggcgggtttcgaaaagttaaatagccgccagaaggccaataatgccaaagttttt
gcgaatccgcgcaatgcggcggccggcagtttgcgtcagctggatccaaaaattaccgcc
cgtcggccgttgatgttttatacctactcactgggcgtggtagcgccggcgtcattggag
ctgccaaaaacccatagcgagcgcctgaatctggttcaaagctgggggatgccgttgtgc
ccggacattgctacggcgaaaggcgggcaggggtgtttagagtattatcagcatatcctg
cgcacccgcgaagcattgccctacgatattgacggcgtggtgtttaaggtcgatagcatt
gcgctgcaacagacgctgggttttgtcgccaaagccccgcgctgggccattgctcaaaaa
ttcccggctcaggaagagataacccgtctgatctcggttgaatttcaggtagggcgaacc
ggggcaattactccggtggcacggctagagccggtatttgtgggcggagtaacggtttcc
aatgccaccttgcataatcaggatgagattaatcgtctgggggtcaaggttggcgataag
gtcgttattcgccgggccggcgatgtaattccgcaggtggtctctgtggtcaccagcgag
cgtcctgaaaccgcccatgatattgaatttccgagccagtgtccggtgtgcgattcgcac
attgaaaagctcgccgatgaggcggtggcgcgctgtaccggcggcttaatctgtgccgcc
cagcgtaaacaggcgctgaaacattttgcttcgcgcaaagccatggatattgacggtctt
ggcgataaactcattgatcagctggtggatgccgaactggttaaaagcccggctgatttt
tttgacctgaacatttctgagcttatcggcctggagcggatggcggaaaaatcggccagc
aagctgctgggttccctgcaagactcaaagcaaaccaccctggccaagtttttatatgct
ctggggattcgtgaagtgggtgagtccaccgcgaataatctggccctgcattttaaatcc
cttgaagctgttatgcaggctgatgtgacggccttgcaggaggtcagtgacatcgggcat
gtggtagcgcaacatatatctttgtttttcagggaaccgcacaataccgaaattgttgag
gcattgctggcagcgggtattcactggcctgaaatagaacaaccctcgggcgctttgccg
ttagaggggcaaacctgtgtgctcaccggcagcctcagtcagatgagtcgtaccgatgca
aaagggcggttacagcagttaggggcgaaagtggccgggtcggtatcggccaatactcag
tttctggtagcaggcgacaaagccggttccaagctgacaaaagctcaggatctgggtgtg
acggtctggagcgaagacgacctgattgcctttttacagcagcacaatgtgtattaa
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integrated database retrieval system
