Serratia sp. FGI94: D781_3225
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Entry
D781_3225 CDS
T02433
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03030
DNA replication
smaf03410
Base excision repair
smaf03420
Nucleotide excision repair
smaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D781_3225
03410 Base excision repair
D781_3225
03420 Nucleotide excision repair
D781_3225
03430 Mismatch repair
D781_3225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smaf03032
]
D781_3225
03400 DNA repair and recombination proteins [BR:
smaf03400
]
D781_3225
Enzymes [BR:
smaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D781_3225
DNA replication proteins [BR:
smaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D781_3225
DNA repair and recombination proteins [BR:
smaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D781_3225
NER (nucleotide excision repair)
GGR (global genome repair) factors
D781_3225
MMR (mismatch excision repair)
DNA ligase
D781_3225
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D781_3225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AGB83449
UniProt:
L0MHS4
LinkDB
All DBs
Position
complement(3395391..3397412)
Genome browser
AA seq
673 aa
AA seq
DB search
MATIIETINQLRTQLRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDDESFLAFYKRVQDRLKSSEALTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEKMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKAWGLPVSDRARLCSGSDEVLAFYRQVEQDRGGLGFDIDGVVVKIDDIDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVEERRPLDAREVVFPQHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKDPADLFGLSAG
LLTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLDALRA
ADVEALKLVPDVGEVVAKHVVNFFAEALNQQVIDKLVSAEIGISWPAPVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccacaataatcgaaacaatcaatcaactgcgaacccaattacgccatcatgaatac
cagtaccacgtgctggacgcgccggaaattcccgatgcggaatatgaccgcctgatgcgc
gagctgcgcgcgctggaagaggcgcatcccgaactgatcaccgccgactcgccgacccag
cgcgtcggtgcagcgccgctggcggcgtttgaccaggtgcgccatgaggtgccgatgctg
tcgctggacaacgtgttcgacgatgagagcttcctggcgttttataagcgggtgcaggac
cggctgaaaagcagcgaggcgctgaccttctgctgcgagctgaagctggacgggctggcg
gtcagtctgctgtatgaagacggcgaactggtgcgcgccgccacgcgcggcgacggcacc
accggtgagaacatcaccgccaatgtgcgcaccatccgcgccattccgctgcgcctgacc
ggcgacaatattccgcgccggctggaagtgcgcggcgaagtgtttatgccgcaggccggc
tttgaaaaaatgaatgaagaggcgcggcgcaaggatggtaaggtgtttgccaacccgcgc
aacgccgccgccggatcgctgcgtcagctggatccgcgcatcaccgccaaacgcccgctg
accttcttctgttacggcgtcggcctgctggaaggcggcgagctgccgcgcagccactgg
cagcgcctgatgcagtttaaagcctgggggctgccggtcagcgatcgcgccagactgtgc
agcggcagcgacgaggtgctggccttttaccgccaggttgaacaggatcgcggcgggctg
gggtttgatatcgacggcgtggtggtgaagattgacgatatcgacctgcaggaacagctg
gggtttgtcgcccgcgcgccgcgctgggccaccgcctttaagttcccggcgcaggagcag
attacccaggtgcgtgaggtcgaattccaggtcggccgcaccggggcgattacgccggtg
gcgcggctggagccggtgttggtggccggcgttaccgtcagcaacgccacgctgcacaat
gccgatgaaattgagcgcctcgggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtggtggaagagcgccgtcctctcgatgcgcgc
gaagtggtgttcccgcagcactgcccggtatgcggctccgacgtcgagcgggtggaaggc
gaagcggtcgcgcgctgcaccggcggtttgatctgcgcggcgcagcgtaaagaggcgctg
aagcacttcgtctcccgccgggcgctggacgttgacggcatgggcgacaaaatcatcgaa
cagctggtggaaaaagagtacgtcaaagatcctgccgatctgttcggtctctctgccggc
ctgctgaccgggctggatcgtatggggccgaagtcggcgcagaacctggtgaacgcgctg
gaaaagtccaaacagaccaccttcgcccgtttcctgtatgcgctgggcatccgcgaggtc
ggcgaagcgacggcggccaacctggcggcgcatttcggctcgctggacgcgctgcgtgcg
gcggacgtagaggcgctgaaactggtgccggacgtgggcgaagtggtggcgaagcacgtg
gtgaatttctttgccgaagcgctgaatcagcaggtaatcgacaaactggtcagcgcggag
atcggcatcagctggccggcgccggtagtggtggcggcagaagagatcgacagcccgttc
gccggtaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgatgaggctaaa
gaccgcctgacggcgctgggggcgaaagtcagcggcagcgtctcgaagaaaaccgatctg
gtgatcgccggcgaggccgccggctccaagctggccaaggcgcaggagctgggcatcgcg
gtgatcgacgaagcggaaatgatccgcctgctgggtgactga
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