Serratia sp. FGI94: D781_4529
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Entry
D781_4529 CDS
T02433
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03030
DNA replication
smaf03410
Base excision repair
smaf03420
Nucleotide excision repair
smaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D781_4529
03410 Base excision repair
D781_4529
03420 Nucleotide excision repair
D781_4529
03430 Mismatch repair
D781_4529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smaf03032
]
D781_4529
03400 DNA repair and recombination proteins [BR:
smaf03400
]
D781_4529
Enzymes [BR:
smaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D781_4529
DNA replication proteins [BR:
smaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D781_4529
DNA repair and recombination proteins [BR:
smaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D781_4529
NER (nucleotide excision repair)
GGR (global genome repair) factors
D781_4529
MMR (mismatch excision repair)
DNA ligase
D781_4529
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D781_4529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
RecR_HhH
HHH
RNA_ligase
DUF6079_1st
Motif
Other DBs
NCBI-ProteinID:
AGB84691
LinkDB
All DBs
Position
complement(4768731..4770455)
Genome browser
AA seq
574 aa
AA seq
DB search
MKGHLFYGAVFFILAMVISACVQAETCPHWPAERLRNELNALEEQLARWDAAYYQRGQSL
ISDELYDSLRQKQQFWRICAGRAGEPPLPLLPAGKMPHPVAHTGLRKLTDRRAVARWLAE
RRDVWLQPKIDGVAVTLVYRQGKLAQAISRGDGRQGEDWLEKVRVIPGVPSTLAGAPDFL
VLQGELFLLMTGHRQQVHGGVNARASVAGALMRNRPSERLAQLGIFIWAWPDGPPEMSQR
LAQLAAWGFTLARDYTRPVSSVEDVIRWRERWFATPLPFVTDGVVLHQARSPSGRYWRNK
PALWAVAWKYPPAEQVTRVERVMFRIGRTGKITVVLALDPLQLDDKWVRRVNIGSLARWR
FWDIVPGDQVAVSLKGQGIPQVTRVAWRSVERPVLTAPDAERYHAFSCFTPQAGCRQQFI
ARLVWLSGPQGLMMNGVSEASWRMLVEHGRVKELADWLTLTPESLRTLPGVGDKQAQRLH
QQFMLARRQPFQRWLLALGVPLSAEQLAGVTGWQQAKRLPTHIWQRQAGVGDKRAAQLVA
FFRQPALQRVANSLQRQHIAGFADDALSDPDVDN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggacaccttttttacggcgccgtgttttttattctcgcgatggtcatctccgct
tgcgtgcaggcggaaacctgtccgcactggccggcggagcggctgcgcaacgaactgaat
gcgttggaagagcagctggcgcgttgggatgcggcctattaccaacgcgggcaaagtttg
attagcgacgaactctatgacagcctgcggcaaaagcagcagttttggcggatttgcgcc
gggcgggcgggggagccgccgctgccgctgttgccggcgggaaaaatgccccatccggtc
gctcataccgggctgcgcaagctgacggaccgccgggcggtagcccgctggctggcggag
cgccgtgacgtgtggctacagccgaagatcgacggcgtggccgtaacgctggtgtaccgg
cagggcaaactggcgcaggcgatcagccgcggcgacggccggcagggggaagactggctg
gagaaggtcagggtgatccccggcgtgccgtcaacgctggcgggcgcgccggactttctg
gtgctgcagggggaactgtttctgctgatgaccggtcatcgccagcaggttcacggcggc
gtcaacgcgcgcgccagcgttgccggcgcactgatgcgtaaccggccctcggaacggctg
gcgcagctggggattttcatctgggcctggcccgatggcccgcccgagatgtcgcagcgg
ctggcgcagctggcggcgtggggctttacgctggcgcgggactatacccggccggtgagc
tcggtagaggacgttatccgttggcgtgagaggtggtttgccactcccctgccttttgtc
accgatggtgtggtgctgcatcaggctcgttcgccgtccgggcgctactggcgtaataag
ccggcgctgtgggcggtagcgtggaaatatccgccggcagaacaggtgacgcgcgtggag
cgggtgatgttccgcattggccgcaccggcaaaattacggtggtgctggctttggatccg
ctgcaactggatgataaatgggtgcgacgcgtcaacatcggttcgctcgcccgctggcgg
ttctgggacatcgtgcccggtgatcaggtcgccgtcagcctgaagggacaggggatcccc
caggtgacccgcgtggcgtggcgcagcgtggaacggcctgtgctgacggcgccggatgcc
gagcgctatcacgccttcagctgctttaccccgcaggccggttgccggcagcagtttatc
gcgcggcttgtgtggctgagcggcccgcaggggttgatgatgaacggcgtcagcgaagcc
agctggcgcatgctggtcgaacacggacgggtgaaagaactggcggactggctgacgctg
acgccggaaagcctgcgcacgctgccgggggtgggtgataagcaggcgcagcggctgcat
cagcaatttatgctggcgcggcggcagccgttccaacgctggctgctggcgttgggggtg
ccgctgtcggccgaacaacttgccggggtgacggggtggcaacaggccaaaaggttgccg
acgcatatatggcagcggcaggccggcgtcggcgataaacgggcggcgcagctggttgct
ttcttccgccagccggcgctacagcgcgtggcaaacagcctgcagcggcagcatatcgcc
ggctttgccgacgatgcgctcagtgatccggatgttgataattga
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