Solibaculum mannosilyticum: C12CBH8_03400
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Entry
C12CBH8_03400 CDS
T07247
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03030
DNA replication
sman03410
Base excision repair
sman03420
Nucleotide excision repair
sman03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C12CBH8_03400 (ligA1)
03410 Base excision repair
C12CBH8_03400 (ligA1)
03420 Nucleotide excision repair
C12CBH8_03400 (ligA1)
03430 Mismatch repair
C12CBH8_03400 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sman03032
]
C12CBH8_03400 (ligA1)
03400 DNA repair and recombination proteins [BR:
sman03400
]
C12CBH8_03400 (ligA1)
Enzymes [BR:
sman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C12CBH8_03400 (ligA1)
DNA replication proteins [BR:
sman03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C12CBH8_03400 (ligA1)
DNA repair and recombination proteins [BR:
sman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C12CBH8_03400 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C12CBH8_03400 (ligA1)
MMR (mismatch excision repair)
DNA ligase
C12CBH8_03400 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C12CBH8_03400 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
Nlig-Ia
HHH_2
HHH_5
BRCT_2
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
BCI59701
UniProt:
A0A7I8CZ02
LinkDB
All DBs
Position
complement(364256..366277)
Genome browser
AA seq
673 aa
AA seq
DB search
MEQNTLRKQRELTDRLNRYRNEYYNYNNPSVSDEVYDRLFDELHKLEQETGIQMSNSPTV
TVGYPVVGKLEKTAHKIPLLSLDKVKSSVDLCRFMGEHQVMIMLKLDGLTIKLTYENGEL
VEAATRGDGDEGEIVTHNARAISGIPAHIQYPGRLVVTGEAFIRPRDFERLNTSIVDENG
ETYKNGRNLAAGSVRLRDAGECMERCVTFMPFNVLEGFDDLPRKSERLKEIRPLGFTPCK
YLVTKRPLTQAETEDGIKQLQQYAKDSDIPIDGIVVTYNDIAFSKRCGRTGHHYKDGLAF
KFEDELFKTTLRSIEWTPGRTGEIAPVAIFAPVEIEGCEVTRASLHNLSFIEDLELMPGN
RILVSKRNMIIPHVEENMDRGGFNLEAAFPHQCPCCGQPTRVHETKGRDENGKERIIKTL
FCDNATCETRKLKKFVHFVSKKAMNIEGLSEATLEKLIGRGWIHSYLDLYRLDQHRDEII
RMEGFGVKSWQRLWDAVQQSRNTTFERYVIAMDIPMIGNTASGVLCREFHGSLEEFRDAV
YTGYDFRQLPDFGETLHNNIHEWFCNEENFCIWEELQMMMNIQKPAAANNQAVGQDTPFA
GKNIVVTGKVEPYTRDEMNSLIASLGAVAGSSVSRKTDYLVCGEKAGSKLSKAQELGIRV
LTPNEFFNMAGVA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaatactttgagaaagcagcgggagctgaccgaccggctcaaccgctaccgc
aacgaatactataactacaacaatcccagcgtcagcgatgaggtctatgaccggctcttt
gacgaacttcacaaactggaacaggagacgggcatccagatgtcgaactctcccactgtc
accgtgggctatcccgtggtaggcaagttagagaaaaccgcccataaaatcccgcttctt
tctctggataaagtaaaaagcagcgtggatttgtgccggtttatgggcgagcatcaggtg
atgatcatgctcaagttggacggccttaccatcaaactgacctatgagaacggcgaactg
gtggaagcggccacacggggcgatggtgatgagggtgagatcgtcactcacaacgccaga
gcaatcagtgggattccagcccatattcagtacccggggcgtctggtagtcaccggtgag
gcgtttatccgtccccgtgatttcgagcgtctgaacacttcgatagtggatgagaatggt
gaaacctacaagaatggccgtaatctggcggctggctcggtgcgcctgcgggatgccggc
gagtgcatggaacggtgtgtgaccttcatgcccttcaatgttctggagggttttgatgac
ctgccccgcaagtcggaacgcctcaaagaaattcggccgctgggctttactccgtgcaag
tatctggtgacgaagcggccattgacgcaggcggagaccgaggacggcatcaagcagctg
cagcagtatgcaaaagacagcgatattcccatcgatggcatcgttgtaacctacaatgat
attgccttttccaaaagatgcgggcgcacaggacatcactataaggacggtctggcgttc
aaatttgaggacgagctgtttaagacaacacttcgttccatcgagtggacgccgggacgg
actggtgagattgcgcctgtagccatctttgctccagtagaaatcgaaggatgcgaagtg
acacgggccagcctgcacaatctgtccttcattgaggacctggagctgatgccgggcaac
cgcatactggtcagcaagcggaatatgatcattccgcatgtggaggaaaacatggacagg
ggcggtttcaatctggaagcggcgttcccgcaccagtgcccctgctgcggtcagcctacc
cgcgttcatgaaaccaaagggcgggatgaaaacggcaaggagcggatcatcaagactctg
ttctgcgacaatgccacctgcgagacacggaaactcaaaaagtttgtccattttgtcagc
aagaaggcgatgaacattgaggggctgtccgaggcgacgctggaaaaactgattggccgt
ggatggattcacagctatctggatctataccggctggatcagcaccgggatgaaattatc
cgcatggagggctttggcgtaaagtcctggcagcgcctgtgggatgctgtccagcagagc
cgcaacaccacctttgaacggtatgtgattgccatggacattcccatgatcggcaacaca
gccagcggtgttctctgccgggagttccatggcagtcttgaagaatttcgggacgcggtt
tatacgggctatgacttccgccagctcccggattttggagagacgctgcacaacaatatc
catgaatggttctgcaatgaagaaaatttttgtatttgggaggaattacagatgatgatg
aacatccagaagccggccgcggccaacaatcaggcagtcggccaggacactccatttgcc
gggaagaacattgtggtgacaggcaaagtagagccctatacccgcgatgagatgaacagc
ctgatcgcctctctgggcgctgtggccggcagttcggtgagccgcaagaccgattatctg
gtctgcggtgagaaggccggcagcaaactgtccaaggcacaggagttgggcattcgggtg
ctgacgccgaatgagtttttcaatatggctggtgtggcttaa
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