Candidatus Sulfurimonas marisnigri: HUE87_08355
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Entry
HUE87_08355 CDS
T07564
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smas
Candidatus Sulfurimonas marisnigri
Pathway
smas03030
DNA replication
smas03410
Base excision repair
smas03420
Nucleotide excision repair
smas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUE87_08355 (ligA)
03410 Base excision repair
HUE87_08355 (ligA)
03420 Nucleotide excision repair
HUE87_08355 (ligA)
03430 Mismatch repair
HUE87_08355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smas03032
]
HUE87_08355 (ligA)
03400 DNA repair and recombination proteins [BR:
smas03400
]
HUE87_08355 (ligA)
Enzymes [BR:
smas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUE87_08355 (ligA)
DNA replication proteins [BR:
smas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUE87_08355 (ligA)
DNA repair and recombination proteins [BR:
smas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUE87_08355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUE87_08355 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUE87_08355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUE87_08355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QOY53905
UniProt:
A0A7S7LYP4
LinkDB
All DBs
Position
complement(1654600..1656552)
Genome browser
AA seq
650 aa
AA seq
DB search
MNLQEYKEAVEKLNLYSHHYYVLDDPITTDEVYDKLYHEVVEYEQNNKDDVLKNSPTMRV
GDVVRDGFTKASHLTRMWSLEDVFDAEGLQKWLTKTYKLDKNISFYCEPKFDGASLNLIY
ENGELVQGITRGDGEIGELITQNVKTIKTVPLIIEYDERIEIRGEVVIFKEEFEKINEAR
MKDGEAVFANPRNAAAGSLRQLDSSVTASRNLVFLPYGVGENLLEHKLLSDKMEFIYSLG
FRKPPQSSTCKDFAEIEDIYEIMNRDRDSYSMMLDGMVVKVNEIASQIDMGYTVKNPRFS
VAYKFPAVEKITTVKEIILQVGRTGAVTPVAIVEPTDIDGVVVERATLHNFDEIDRKDIR
LNDKVIILRSGDVIPKIIKVLTHERDGSEVKYERPQSCPVCNSELLDEGVLLKCQNLTCE
ARVINSIIYFASKPCLNIDGLGNKIVEALFNSGLVKSVVDLFDLTLDKLLALEGFKEKKS
QNLLNSLEDAKGSEYWRFLNSLGIEHVGEVASKTLSEKFGSNFLHVSKEEIIACDGIGEE
MAESVLEFVRVNKETILKLQDILKPLEPIQKAEAKENPFKGKTAVLTGTMSESRGAIKEM
LEELGAKVSGSVSKKTDFLIYGEDAGSKYDKAISLHVECLTEQEMREKIE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaatttacaagagtataaagaagcggtagaaaaacttaacctctactcacatcattac
tatgtcttagatgaccctattaccactgatgaggtttacgataaactttaccatgaggtt
gtggaatatgaacaaaataataaagatgatgttttaaaaaactcaccaacaatgagagtt
ggtgatgtagttagagatggctttacaaaggcttcacatctcactcgcatgtggagttta
gaagatgtttttgacgcagagggcttgcaaaagtggcttacaaaaacctacaaactagat
aaaaatatctcattttattgtgagccgaaatttgacggggctagtctaaaccttatctat
gaaaacggtgaattagttcagggaattacccgtggtgatggagagataggtgagcttata
actcaaaatgttaaaacaataaaaactgttccacttatcatagaatatgatgagcgtata
gagattcgcggtgaagtggttatatttaaagaagagtttgaaaaaataaacgaagcaaga
atgaaagatggtgaagctgtttttgcaaacccaagaaatgcagctgccggaagcttgcga
caacttgattcttctgtaactgcttcaagaaatttggtctttttgccttacggtgttgga
gagaacttgttagaacataaactgctaagtgataagatggagtttatctactccttaggg
tttagaaagccacctcaaagctctacctgtaaagattttgcagagatagaagatatatat
gagattatgaatagagatagagatagttactctatgatgcttgatggtatggttgtaaaa
gtaaacgaaatagcttctcaaatagatatgggttatacggttaaaaatcctcgtttttcc
gttgcttataaattcccagcggttgagaagattactacagtaaaagagattatacttcag
gttggacgaactggcgctgtgactcctgtggcgatagttgagcctactgacatagatgga
gtagtagtagaacgggcaactttgcataacttcgatgagatagatagaaaagatataaga
cttaatgacaaagttattatcctcagaagcggggatgttatacccaagattataaaagtt
ttaactcatgagagagacggaagcgaagtaaaatacgaaagaccgcagagttgtccagtt
tgtaatagtgaactcttggatgagggggttttgcttaagtgccaaaatcttacatgtgaa
gcaagagttataaactcaataatatactttgcctcaaaaccgtgtcttaatatagatgga
cttggcaacaaaatagttgaggctctttttaactctggtcttgtgaaaagtgttgtagat
ttatttgatttaacattagataaacttttagcacttgaaggttttaaagagaaaaaatct
caaaatcttttgaactctctagaagatgctaaaggctctgaatattggcgttttttaaac
tcacttgggattgaacatgtaggagaggttgcatctaaaactttgagcgagaagtttgga
agtaacttcttacatgtaagcaaggaagagataatcgcttgtgatggaataggcgaagag
atggctgagtctgttttggagtttgtaagggtaaacaaagagactattttaaaattacaa
gatattttaaaaccattggaacctatacaaaaagctgaagcaaaagagaaccctttcaaa
ggtaaaacagcagtgctaaccggaactatgagtgagtcacgcggtgctataaaagagatg
ttagaagagcttggcgcaaaagtatcaggttcagtttctaaaaagacagactttttaata
tatggcgaggatgcgggaagcaaatatgacaaagcaatatctttacatgtagagtgttta
acggagcaagagatgagagaaaaaattgagtag
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