KEGG   Scophthalmus maximus (turbot): 118285297
Entry
118285297         CDS       T09850                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
smau  Scophthalmus maximus (turbot)
Pathway
smau04010  MAPK signaling pathway
smau04137  Mitophagy - animal
smau04141  Protein processing in endoplasmic reticulum
smau04210  Apoptosis
smau04217  Necroptosis
smau04621  NOD-like receptor signaling pathway
smau04622  RIG-I-like receptor signaling pathway
smau04920  Adipocytokine signaling pathway
smau05132  Salmonella infection
smau05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:smau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    118285297
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    118285297
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    118285297
  09143 Cell growth and death
   04210 Apoptosis
    118285297
   04217 Necroptosis
    118285297
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    118285297
   04622 RIG-I-like receptor signaling pathway
    118285297
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    118285297
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    118285297
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118285297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smau03019]
    118285297
   04121 Ubiquitin system [BR:smau04121]
    118285297
Enzymes [BR:smau01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118285297
Messenger RNA biogenesis [BR:smau03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     118285297
Ubiquitin system [BR:smau04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    118285297
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_2 SlyX zf-RING_4 zf-RING_6 zf-C3HC4_4 ATG16 DUF1664
Other DBs
NCBI-GeneID: 118285297
NCBI-ProteinID: XP_035464741
EnsemblRapid: ENSSMAG00025012428
LinkDB
Position
20:14916241..14931612
AA seq 607 aa
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
AVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINESCNWKGSIKD
YELTHEGKCEFMIIPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERAYA
YEHLNLLLHYIMGMKVSMEGLQPQGLELAGHKLVELQQSLRELEARVSQLSTTSSGPPVQ
GAAAATATASTSTSTSTSSSSSGPHGPPASSPLPPPPTLAPTLSVSTSFTPLPSSVGAAL
ELQLHSEKTKVAELGRRCTELEVKSSTFENVVCVLNREVERFATTMEASNRQHKLDQDKI
EALSNKVRQLERTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAP
AMFSPAFYTNKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLML
LDQSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKA
IVDLTGL
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggccacacaggaaccttcccctccctcgtccatggagagcaacaagcccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctccgacggccatttcaagcgcagtgtggccaccgcttctgctcctactgcttcaacagg
gcagtgagtaatggaccccagaaatgcagcgcctgcattaaagaggatatttttgaggat
cctacgtcgattttgaaacaaggatgtgcttttcctgacaacgcagttcgaagggaggtc
gaaaacctgtccgctgtttgtatcaatgaaagttgcaattggaaaggcagcattaaagac
tacgagctgacccacgaggggaagtgtgagttcatgatcatcccctgcccctcctgcaaa
gaacgaatccgcttcaacgaacaggagcgccataacgaacgagagtgcccggagagaacg
ctcaactgcaagtactgcaaggagccatttcactttaaaaatatcaaggcacacgatgag
atctgtcccaagtacccgatgatctgtgaaggctgcgccaagaagaaaatacccagagag
aagtatgtggaccacattaagttctgcagcaaattcagaacaccgtgtcgatttcacgtc
gtgggatgtgatatgtccgtggagaaggaaaagattcatgaccacgagcgcgcctacgcc
tacgagcacctcaatctgctgctgcactacatcatgggcatgaaggtgagcatggagggc
ctgcagccccagggactggaactcgctggacacaaactggtggaactccaacagtccctc
agggaactcgaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagccgccgccgccaccgccaccgcctccacctccacctccacctccacctcatcctcc
agctctggtccccatggtccacctgcttcatctcctctccccccacctcccactctggcc
cccaccctctccgtgtctacctctttcacacctttgcccagctcggtgggagcggcgctg
gagctccagctccacagcgagaagaccaaagtggccgagctgggacgcaggtgcacggaa
ctggaagtcaaatccagcacgtttgaaaacgtggtgtgcgtgctgaatagagaggtggag
aggttcgccaccaccatggaggccagtaaccgtcagcataagctggaccaggataagatc
gaggctctcagtaataaggtgcgacagctggagaggacagtggggctgaaggacctgacg
gttgctgagatggagggccggctcagggaaatgtctgccaccacctttgacggcgtcttt
gtctggaggatctccgattttgccaaaaagagacaggacgccatcgctggtcgagcccct
gccatgttctcaccagccttctacaccaacaagtatggctacaagatgtgtctgcggatc
tatctgaacggagatgggacggggcgtggcagccacttgtccttgttctttgtggtgatg
aggggactgagtgacgctctgctcaaatggcccttcaaccaaaaggtgacactgatgctg
ctggaccagagcaacagggagcacatcatcgacgccttccgacccgacgtcacgtcctcg
tccttccagagacctgtgagcgagatgaacatcgccagtggctgtccgctcttctgccca
ctctccaagctcgacgccaagaactcttacatccgcgacgacaccattttcatcaaggcg
attgtggacctcaccggcctctag

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