Scophthalmus maximus (turbot): 118286576 Help Entry 118286576         CDS       T09850                                  Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism smau  Scophthalmus maximus (turbot) Pathway smau04115   p53 signaling pathway smau04145   Phagosome smau04148   Efferocytosis smau04350   TGF-beta signaling pathway smau04510   Focal adhesion smau04512   ECM-receptor interaction smau04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:smau00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     118286576   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118286576  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     118286576    04148 Efferocytosis     118286576   09143 Cell growth and death    04115 p53 signaling pathway     118286576   09144 Cellular community - eukaryotes    04510 Focal adhesion     118286576   09142 Cell motility    04820 Cytoskeleton in muscle cells     118286576  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:smau04131]     118286576   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:smau00536]     118286576 Membrane trafficking [BR:smau04131]  Endocytosis   Phagocytosis    Opsonins     118286576 Glycosaminoglycan binding proteins [BR:smau00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118286576 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF_CA cEGF EGF Laminin_G_3 TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  118286576 NCBI-ProteinID:  XP_035466994 UniProt:  A0A2U9CLE3 LinkDB All DBs Position 15:complement(13090037..13137717) Genome browser AA seq 1243 aa AA seqDB search MSSDGLNSARVGERSQSHKCKDRNKKSARGDTSDSRGEQPGHVTFLLRVLLLSLLWSISH LKSQSSFQDFKMMLECGIFLLLMLWSGEGARLAESRDDTSVYDLFDLAQVTKRNHGVSAV KGADPNSPAYKVLDADLIPPVPAGAFRDLLDSVQAERGFLLLANFKQFRKSRGSLLTVEK SDGSGPVLEIVSNGRASTLDLVYSTSGQQQVVSIEDADLATGHWKNITLFVQDDRAQLFV GCEEVNVAEMDVPIQKVLRPEVADVARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRN KGCLSGATLTDVMTLDSPVNGSSPAIRDDYNDHKAKDLQSVCGFSCEDISSMFKELRGIG VVVKQLSHKLSKVSEDSTLLKNQMNIHSGICIHNGIVYKDKDEWTVDGCTECTCQNSATV CRKISCPLIPCANATVPDGQCCPRCGTPPHAEDGWSPWSEWTHCSVTCGRGIQQRGRSCD RINSNCEGTSVQTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTP QMGGMDCEGEGRQTEICQKSPCPINGGWGPWSPWDICTVTCSGGIQTRKRLCTAPVPKYG GKDCVGDATASQVCNKQDCPIDGCLSNPCFSGTKCTSFPDGSFRCGKCPLGYRGNGVICK DIDECKEVADACHSHNGVHRCENTEPGYNCLPCPPRFSGPQPFGRGVEMATAKKQVCKPR NPCQDGSHDCNKNANCVYLGVFSDSMFRCECKPGYAGNGRICGGDSDLDGWPNTDLLCVA NATYHCKKDNCPNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADR DDVGDRCDNCVFEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRD GVGDHCDNCPLEHNPDQVDSDSDLVGDKCDSNQDIDEDGHQNNLDNCPYIANANQADHDK DGKGDACDHDDDNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIYDVCP ENFAISETDFRRFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVD FSGTFFINTDRDDDYAGFVFGYQSSARFYTVMWKQITQTYWSNTPTRAQGYSGLSIKVVN STTGPGEHLRNALWHTGDTQGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYE GKRIMADSGNIFDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3732 nt NT seq  +upstreamnt  +downstreamnt atgtcctccgacggtttaaatagcgcccgtgtcggcgagcggagtcagtcgcacaagtgc aaagatcggaataaaaagagcgcacgaggagacacgagcgattccagaggagagcagccg ggacacgtgactttcctcctccgcgtgttgttgttgtcgttgttgtggtccatttcccat ttgaaaagtcagtcgtcgtttcaggatttcaagatgatgctggagtgtggcatcttcctg ctgctgatgctttggagtggcgagggcgcgcgactggcagagagtcgggatgacaccagc gtgtacgacctgttcgacctggcccaggtgaccaagaggaaccacggggtgagcgcggtg aagggcgcggaccccaacagccccgcgtacaaggtcctggacgcggacctgatccccccc gtccccgccggcgccttcagggacctcctcgactccgtgcaggcggagcggggcttcctg ctcctggccaacttcaagcagttccggaagagccgcggcagcctgctgaccgtcgagaag agcgacggctccgggcccgtgttggagatcgtgtccaacggccgggcgagcaccctggac ctggtctactccaccagcggccagcagcaggtggtgtccatcgaggacgcggacttggcc acgggccactggaagaacatcacgctgttcgtccaggacgaccgcgcgcagctcttcgtg ggctgcgaggaggtcaacgtggcggagatggacgtgcccatccagaaggtgctgaggccg gaggtggcggacgtcgcccggctgcggattggaaagggcgcggtgaaagaccgattcatg ggagttcttcaaaacgtgcgttttgtctttgggaccactctcgatgccatactcagaaat aagggttgcctcagtggagctaccttaacagatgtcatgaccctggacagcccggtcaac ggctccagtcctgccattagggacgattacaacgaccacaaagccaaagatctgcagtct gtctgcggcttctcctgtgaggacatctccagcatgtttaaggagctcaggggaatcggc gtggtcgtcaaacagctgtcgcacaagctcagcaaagtgtctgaggacagcacgctgctg aaaaatcaaatgaacatccacagtggaatttgcatccacaatggcatcgtgtacaaggac aaagatgaatggaccgtggacggctgtactgagtgcacctgtcagaactctgctactgtg tgccgcaaaatctcctgccctctgatcccatgtgctaacgccaccgtgcccgacggacag tgctgtcctcgctgtggaacaccgccacatgctgaggatggatggtctccctggtctgag tggacccattgttccgtgacttgcggccgtggcattcaacagcgtggacgttcctgcgac cgcatcaacagcaactgtgagggcacttctgtccagacccgtgactgctaccctcaggaa tgtgacaaacgcttcaaacaggatggcggttggagtcactggtctccctggtcttcgtgc tccgtgacctgcggtgaaggagtcatcacccgaatccgcctctgcaactcccccacaccc cagatgggtggcatggactgcgagggagagggacgtcaaacagaaatctgtcagaagtct ccttgccccatcaacggaggctggggaccttggtcaccctgggacatctgcactgttacc tgtagcggaggaatccagactcgcaaacgtctttgcactgcccccgtccccaaatatggt ggaaaagactgtgttggtgatgccactgcgtctcaagtgtgcaacaaacaggactgtcct attgatggttgtctgtccaacccatgcttctctggcacaaagtgcaccagcttccccgat ggctctttcaggtgtggcaagtgtccacttggctaccgtgggaatggcgtcatctgcaag gacattgacgaatgtaaagaagttgcagatgcttgccactctcataatggagtccatcgc tgtgagaacactgagcccggttacaactgtctgccttgccccccgcgtttctccggccct cagccctttggaagaggagtggaaatggcgacggctaagaaacaggtttgcaaaccccgt aacccttgtcaggatggcagccacgactgcaataaaaacgcaaactgcgtctacttgggc gtcttctccgattccatgttccgctgtgagtgcaagccaggatatgcagggaacggccgt atctgtggaggggacagtgacctggatggttggcccaacactgacctgctgtgtgtggcg aatgcaacctaccactgcaagaaggataactgccccaaccttcccaactctggtcaggaa gatcacgacaaagatggcctgggtgatgaatgtgaccatgatgatgacaatgatgggatc cccgatgatagggacaactgcccaagagtgtacaaccctgcccagtatgacgcagacagg gatgatgttggcgaccgctgtgacaactgtgtgttcgaggctaataccgaccaaaccgac acagacaacaatggagagggtgatgcatgtgctgttgacattgatggcgatggaattctg aatgagaacgacaattgcccttatgtttacaatgtggaccagagagatactgatagagat ggtgtcggtgaccattgtgacaattgccctctggagcacaaccccgatcaggttgactct gactccgatcttgttggagacaagtgcgacagcaaccaggacattgacgaggacggtcac cagaacaacttggacaactgcccctacatcgccaatgccaaccaggcagaccacgacaag gatggcaagggtgacgcttgcgaccatgacgatgacaatgacggcatccccgatgacaaa gacaactgtcgactggcctttaacccagaccaactggactctgatggtgatggccgtggt gatatttgcaaagatgactttgaccaagacaatgttctggacatctatgatgtgtgtccg gagaactttgccatcagtgaaacagacttccgcagattccagatggttcccctggacccc aagggtacctcccagattgaccccaactgggtggtccggcatcagggcaaggagttggtc cagactgtcaactgcgatcctggcattgctgttggttacgatgagttcagcgcagtggat ttcagtggaacattcttcatcaacactgacagagatgatgattacgccgggttcgtgttt ggctaccagtcaagcgcacgcttctacacggtcatgtggaaacagatcacccagacctac tggtccaacacacccacaagagctcaaggctactctggcctgtcaatcaaagtggtgaat tccaccacaggccctggtgagcatctgaggaatgccctgtggcacactggagacacccag ggacaggttcgcactttgtggcacgaccccaagaacattggctggaaggactttaccgcc tacaggtggcacctgacccacagacccaagactggacttatcagagtggtcatgtatgag ggcaagagaatcatggccgattctgggaacatctttgacaagacatacgctggtgggcga ctaggcttgtacgtcttctctcaggagatggtttacttctcagacctcaaatatgaatgc agagatacataa

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