Scophthalmus maximus (turbot): 118287715
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Entry
118287715 CDS
T09850
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
smau
Scophthalmus maximus (turbot)
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smau03036
]
118287715 (smchd1)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118287715 (smchd1)
Chromosome and associated proteins [BR:
smau03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
118287715 (smchd1)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
118287715 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_1st
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
118287715
NCBI-ProteinID:
XP_035469075
LinkDB
All DBs
Position
16:1512525..1543737
Genome browser
AA seq
2016 aa
AA seq
DB search
MSSAGAQRLQGASSRGGGRQPRRIRVYDCRSGDKPSSSGPLLETSGLDFNHFLQILHEAM
IPNFTLGLGSVFMKFAIHSHETFVLVTTDRKPLDLDRFAELQNGSTLYLLRRKDQALQLA
MEEHITFTPHYDTLIRSGLHEYYASEGQKPLPYALAELIDNALWATAKNTGTRTIELRML
FDESLGKPAIVVLDNGCGMTLKQLNNWAVFRHSKFTRANSTCESQKDGYVRPDPVPRSLN
SDISYFGVGGKQAVFYIGDSTRMISKPVGSPDVHELVLSKEDFERKERNKEDIYSGVIRN
RKPGDSSHVNKDNERFLHALIAEESGKESFTAVVITGIGPQHITFLKQDFEMWTRELAHT
YHYYIHGLNGNDMKSSFSNSDQLPKIDIQVTLLEKHPRSPRVMNLREVDNDMQTLYINAA
ADKFEFKATTGLDTGTVEGVIRYHPFLYDKETYPEDPYAVQEPCNEDDDSDESGIRHQAR
GKRPIFECFWNGRLIPYTTVSEFDWCAWPGTTSKIPEECYSRFSGVLFTDDKFQVSTNKL
TFMDLEQRVRSKETIFTRVVNGKEQRITHKNMFFSWLKNCHEKLDKQVKFLGFKEIVKRD
DVTSKKMQHPWATFSSIEWDGNIYKTGQLVKSQKTIPILHGTVVQFLLYGDHDKDVFATG
GQVEVCLEPKALYNKNKIIPISKINRIVKEEAIKINIERDLNKLPHKLKVDWPDGNPWPE
NGVRPAGTPLGALKVEILTKNGVSIWTIPTLVHATVNKLSVKLSIKKTGLGNDEEVVSFV
AQHTTKWHFFFRKMETLTDPGSYTLLLETMITESGATTFGDENLPSYELKFTITAGSAEG
FEMDGVSSTLHVGVPFDIPLHLKDCYGNAILSVPSLLPVLKCSDLDLSYETVDSSGSKFI
IKGVKARGKVLNYQQSKTYDLKVTLPGLKKDTQTFKVSVLPGNPHSIHVMTEENPITVEN
GTPVRLNVEIHDEVGNVTAHPRQIVHCQVQGLPPVKIDCSSTGAGQLVTKPINLNIIGGE
PQKLKVQFSQKCMALVVRELKVIPSTRVSLIKLFSRDDENLVLRNNEKIEWLAGGTLGKL
FYKLYDEAGRAVPLTDEIASMIKVNWTSPVNLKDLLQGKLPDIQVPTQVLEDRFYQVSYQ
DQSVSVSFTIKPRPDEPARLKATLLQNTVNLGKTLSGTISEYDPDHTKVFFIYGLIQDNA
QLFPYSDLELVDQHDNATKTLTSNCVNHMTVKAEGLDKSAVSFIWQESNRSVEVTGIRFL
RGSPGIRELLFTCFSYMTAVIVKVTAGHPAQLKLVSGPKQPLQVKNDHSIPTPFIVQLSD
KWGNPSPDKRVVVELTSSPPALKVMTAVISQPVDSEGKASFSVNSVCGPKGYYQLNFNGS
FNNEPIPGPSVSLAVLPDPNKPVSLSVEYDSAARFPAGGTCPVFSVTVVSDEGSPMTTFN
PAAVSMLLWEGVPSQNRPPPTATELRCSKPMENERRDCFHFTNKQIPERAGKYTIQFSLH
IDETRSLLSNQITINVVANQPVKLGPDSQPPAPVVSCCMDIAHRTLVKNMTLTIMDSYGN
PAGQDLGGKVVASIRSSSGDSNKPIPLFDGNIKRYPINLVQGKAHIASLSIKENSPGEDG
SAYTLLFDAEVPMVPTPLAPFELTFHFYNDALNQQKMSELLEKKTELSAALAAHKGLFSG
YSEFLEMLTVQYLSASDKVAELRGFLVRSNVNVAEPISIPDIDRLLKENTTEADRILRDP
RRVCSIRDNFRGQQDVLGMVGHLAYVQDDAAARVISWHIRGDMDCVITRTTEAARRIYDN
TQGRQQVMALDSMYVPPLNRGLPQMRNGRMLFEPPGNPVLARELLMSPQEGESCDIVFQN
ILKETILIDDLDSANNYRREVVQNKMPCPTILTRNGERVSAIGKFGGAQNKAPPIDTLTV
FGAPLPQHYHSLIAQAELLCQCRTAVEKRDRAQKDRDDHLLTMNSLQTREKQQDMEKKEK
RLEEIERQLMMKPMRPVKRGAEGAGEPLGIITKRAK
NT seq
6051 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgctggtgcccagcgtctccaaggcgcgtcctcccgggggggcggacgacag
ccgagacggatccgtgtctatgactgccgctccggagataaaccgagttcctccgggccc
ctgctcgaaacaagtggcttggacttcaatcactttcttcaaatcctgcacgaggcaatg
attcctaactttactttgggtctgggctcagttttcatgaaatttgcaatccattcacat
gaaacatttgtgctggtcacaactgatagaaaacccctggatctggacagatttgcggag
cttcagaatggcagtaccctctacttgctgcgacggaaggaccaagctctgcaattggca
atggaagagcacattacatttacaccacattatgatacattgatccggagtggccttcat
gagtactatgccagtgagggccagaagccattaccctatgcacttgctgagctgatcgac
aatgctctgtgggccacagctaaaaacacaggaacgagaacaatagagttacgaatgctt
tttgatgaaagtcttgggaaacctgccatcgttgtcttagataacggctgcgggatgacc
ttgaagcagcttaataactgggcagtgttcagacactctaaatttaccagggcaaacagc
acatgtgaaagtcagaaagatgggtatgttcggcctgatcctgtccctcgtagtctcaac
agtgacatatcctactttggagttggaggaaaacaggctgttttctacatcggagactca
acaaggatgatcagcaaaccagtaggctccccagatgttcatgaactggttttgtcaaaa
gaggattttgagagaaaagaaagaaacaaagaggatatttacagtggggtcatcagaaac
aggaagcccggtgactcttcacatgtgaataaagacaatgagcgcttcctccatgcttta
atcgctgaggaatctgggaaggaaagcttcaccgctgtggtcattacaggaattggacct
cagcatataacctttttgaaacaagatttcgaaatgtggaccagagagctagctcacaca
tatcactattacatccatggactcaatggaaatgacatgaaaagcagcttttcaaactct
gatcaactccctaaaattgacattcaggtcaccttgctggaaaagcatcccagatctccc
cgtgtgatgaatctaagggaagttgataatgatatgcagactctgtacataaatgctgct
gcagacaagtttgagttcaaggccaccactggactagacactggcacagtggagggagtc
attcgttatcaccccttcctttatgacaaggagacctaccctgaagacccgtacgctgtg
caagaaccttgcaatgaagatgatgactcggatgagtctgggatccggcatcaggcaaga
ggaaagaggccaatctttgagtgtttctggaatggacgactcataccctacaccacagta
tctgagtttgattggtgtgcctggcctggtacaacatcaaaaatccctgaagagtgttac
agtcgtttttcaggagtgcttttcactgatgacaaatttcaggtcagcacgaacaagctc
accttcatggatttggagcagagagtgaggagcaaggaaactatcttcacacgtgttgtt
aatggaaaggaacaaagaattacccacaagaacatgttcttcagctggctaaaaaactgt
cacgagaagttggacaagcaagttaaattccttggcttcaaggagatcgtaaaacgagat
gatgtgaccagtaagaaaatgcagcatccctgggcgacgttctcctccatcgaatgggac
ggcaatatatacaaaacaggccaacttgtgaagtctcagaaaacaattccgattctgcat
ggtaccgtggtccagtttctgctatatggagatcatgacaaagatgtctttgccacagga
ggccaggttgaagtttgtctggaacccaaagcgctctacaacaagaacaagatcataccc
atttctaagatcaacaggattgtcaaggaagaagccatcaagataaacattgaacgtgac
ctcaacaagcttccgcataagctaaaagtggactggccagatggtaacccatggccagag
aatggtgttcgtccggctgggactccgttaggggcactcaaagtcgaaattttgactaag
aatggagtttcaatatggacgattcccacattggtccatgcgacagtgaacaaactgagt
gtcaagctctcaataaaaaaaaccggtcttgggaatgatgaagaggttgtcagttttgtt
gcccagcatacaacaaagtggcatttctttttcagaaaaatggagactctgactgaccca
gggagttatacactgcttctggagaccatgataactgaaagtggtgccaccacctttgga
gacgaaaatctcccaagctacgaactcaagttcaccatcacagcgggcagtgctgagggc
tttgaaatggatggagtgagctccactcttcacgtcggggtgccatttgatattcctctt
catctaaaagattgttatggaaacgcaatactgtctgttcccagtctcctacctgtcctc
aaatgcagtgacctcgatctgagttatgagacagtggacagcagtgggagcaagttcatc
atcaaaggtgtcaaagcaagaggaaaagtcctgaattaccaacagtccaagacatatgac
ctgaaagtgaccctgcctggcctgaaaaaagacacacagactttcaaagtcagtgttctc
cctggtaatccacattcaatccatgtgatgacagaagaaaacccaatcacagtagagaat
ggaacccctgtcaggttaaatgttgagattcatgatgaggttggaaacgtcaccgcacac
cccaggcaaatagtccactgccaggttcagggtcttccgcctgtaaagatcgactgcagc
agcacaggagcaggacagcttgtgacaaagcccataaacctgaacataattgggggagaa
ccacaaaagctaaaggttcaatttagtcagaagtgtatggcgttggttgtgagggagctg
aaggtgatacccagcacaagagtctcgctgataaagctctttagtcgagatgatgagaat
ctagtactgaggaacaatgaaaagatagaatggctggctggaggcacactggggaagctg
ttctacaagctgtatgacgaggctggcagagcagtacctctcactgatgaaatagcttct
atgatcaaggttaactggacgagtcctgttaatctgaaagatttgctgcaggggaagctg
cctgatatacaggtgcccacacaggtgctggaggatcgcttctaccaggtgtcctaccaa
gaccagagtgtgtctgtctccttcactataaaacctcgtccagatgaaccagcacggcta
aaagcaactcttctccaaaacacagtgaacctgggtaaaaccttatctggaaccatcagt
gagtatgaccccgaccacacaaaagtttttttcatatatggtttaatccaagacaatgca
cagctttttccttattcagacttagagcttgtggaccagcatgacaatgcaaccaagacg
ctaacctccaactgtgtgaaccacatgactgtgaaagccgagggtctggacaaatcagcc
gtctcctttatatggcaggagagcaataggtctgtggaggtgacaggaatacgtttcctg
cgtgggagtcctggcatcagagagctgctcttcacttgcttcagctatatgaccgctgtc
atagtcaaagtgactgctggacaccctgcacagcttaaactagtcagtgggcctaagcag
cctctgcaggtaaagaatgaccacagcatccccacacccttcatcgtacaactctctgac
aagtggggaaacccttctcctgacaagcgggttgtggtggaactaacgtcttcaccacca
gcactgaaggtgatgacagctgttatttcacaaccagtggattcagaagggaaagcctct
ttcagtgttaacagtgtgtgcggtccaaaggggtactatcagctcaactttaacggttcc
ttcaacaacgaacccatccctggtccatcagttagtctcgctgtcttacctgatcccaac
aaacctgtcagtctgtcagtggagtatgactcagctgccaggtttcctgctggaggcacc
tgcccagtgttctcagtgactgtggtgtctgatgaaggcagccccatgacaacctttaac
ccagctgctgtgtccatgttgctgtgggagggagtgccatcacaaaacagacctccacca
acagccactgagctgaggtgtagtaagcccatggagaatgaaaggagagactgttttcac
tttacaaataaacagatcccagaacgtgctggaaaatacaccatccagttttctctgcac
attgacgaaacaagatccctactcagtaatcagattactataaatgtggtggccaatcag
cccgtcaaactgggacccgactcccagccaccagctccagtcgtttcctgctgtatggac
attgcccaccgaaccttggtgaaaaacatgactctgacgataatggactcctatggaaac
ccagcagggcaggacctgggtgggaaggtggtcgcttctattcggagctctagtggtgac
agcaacaaacccatccctctgttcgatggcaatatcaaaagatatcctattaacttggtg
cagggaaaggcccacatcgccagcttgtctatcaaggagaacagccctggagaggatggt
agtgcatacaccctcctctttgacgcagaagtgcccatggttcccacgcccttggctcct
tttgagctcaccttccatttttacaatgatgcactgaaccagcagaaaatgtctgagttg
ttagagaagaaaacggagctcagtgctgctcttgctgcacataaaggcctcttcagtggt
tacagtgaattccttgaaatgctgacagttcaatacctgtctgcaagtgacaaagtggct
gagctcagaggttttctggtcagaagcaacgtgaatgtagcagaacccatttccattccc
gatatcgacagactccttaaagagaataccacagaagccgataggattctaagagatccc
agaagagtgtgctccatccgtgacaacttcagggggcagcaggatgttttgggaatggtt
ggtcacttggcatatgtgcaggatgatgctgctgccagagtcatctcctggcacatcagg
ggggacatggattgtgtcatcaccagaacaacagaggcggcacggaggatatatgacaac
actcagggaaggcagcaggtcatggccctcgacagcatgtatgtgccaccattgaacaga
gggttgccacaaatgagaaatggccgcatgctcttcgagcccccagggaacccagtctta
gccagagaactcctgatgtccccccaagagggggagagttgtgacattgtgtttcaaaac
atcctcaaagagacgattctgatcgatgacctggactctgcaaacaactacaggagagag
gtggtgcagaacaagatgccatgtcccaccatactgacgaggaatggggaaagggtcagt
gcgattggcaagtttggaggtgcacagaacaaagccccaccgattgacacattaacagtg
tttggagcccccctcccacagcattaccatagtcttattgcacaagcagagctgctctgt
cagtgtcggacagctgtagaaaagagagacagggcacaaaaggatcgtgacgaccactta
ctaaccatgaattctcttcaaacgagggagaagcaacaagatatggagaagaaagagaag
cggctggaggagattgaaagacaacttatgatgaaacccatgagaccagtgaaacggggt
gcggagggtgctggtgagcctctcggcatcattacaaaaagggcaaaataa
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integrated database retrieval system
