Scophthalmus maximus (turbot): 118289767 Help Entry 118289767         CDS       T09850                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism smau  Scophthalmus maximus (turbot) Pathway smau04115   p53 signaling pathway smau04145   Phagosome smau04148   Efferocytosis smau04350   TGF-beta signaling pathway smau04510   Focal adhesion smau04512   ECM-receptor interaction smau04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:smau00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     118289767 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118289767 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     118289767 (thbs1b)    04148 Efferocytosis     118289767 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     118289767 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     118289767 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     118289767 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:smau04131]     118289767 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:smau00536]     118289767 (thbs1b) Membrane trafficking [BR:smau04131]  Endocytosis   Phagocytosis    Opsonins     118289767 (thbs1b) Glycosaminoglycan binding proteins [BR:smau00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118289767 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 cEGF TSP1_ADAMTS Laminin_G_3 EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  118289767 NCBI-ProteinID:  XP_035472656 LinkDB All DBs Position 18:15108163..15120010 Genome browser AA seq 1169 aa AA seqDB search MRLTDIFLLLMLWKCEGTRVAESRDDNSVYDLFDLIQVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPEGAFRDLIDSIHEERGFLLLLNFKQSKRTRGSLLTVEKRDATGPVFEIVS NGKANTLDIVFSTENKQQVVSIEEADLATGHWKNITLFVQEDRAVLYAGCDEVNTAELDA PIQSILTHETPVSAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCKSSMTSETL ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCDDLVSMFKELKGLGVVVKELSNELRQLTH ENKLIKTRIEFPGGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPIPQLGGKDCAGEGRQT EKCQMSPCPINGNWGPWSPWDTCTLTCGGGVQTRKRLCNDPGPKYGGKECVGEAKDTQMC NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYAGNGVKCKDVDECKEVPDACFE FNGVHRCENTEPGYNCLPCPPRYSGPQPFGRGVEYAAANKQMCTPRNPCLDGSHDCNKNA RCNYLGHFADPMFRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDSDDDNDGIPDDRDNCPFVFNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPLVYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDDKDNCRLAFNPDQLDTDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNGVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaggctgacagacatatttttgctgttgatgctttggaagtgcgagggtacgagagtc gcagagagcagagacgacaacagcgtgtacgacttgttcgatctgatccaagtccccaag aagaaccacggggtcaccctggtgaagggagacgacccgtacagccccgcctacaagatc ctcaacccggacctgatccccccggtccccgagggcgccttcagggacctgatcgattcc atccacgaggagaggggcttcctcctgctgctcaacttcaagcagtccaagcggaccagg gggagcctcctgaccgtggagaagcgggacgccaccgggcccgtgttcgagatcgtctcc aacggcaaggcgaacaccctggacatcgtcttctccaccgagaacaagcagcaggtggtt tccatcgaggaggcggacctggccacgggccactggaagaacatcaccctgttcgtgcag gaggaccgcgcggtgctgtacgcgggatgcgacgaggtgaacaccgcggagctggacgcg cccatccagagcatcctgacgcacgagaccccggtcagcgcgcagctccggattggcaag ggcgcggtgaaagacaggttcatgggggtcctgcaaaacgtgcggtttgtgttcggaaca acactcgatgccatcctccgcaacaaaggatgcaagagctcgatgacgtctgaaaccctg atccttgagaacctcaatggctcctcagccatcagaacagagtacaccggacataagacg aaagacctgcagatggtctgtggcttctcctgcgacgacctggtcagcatgttcaaggag ctgaagggcctcggcgttgtggtcaaggagctgtccaatgagctccgacagctgacgcat gagaacaagctgatcaagacccgcattgaattccccggcggcgtctgcatccacaacggc atcgtgcacaagaacaaagacgagtggaccgtcgacgactgcaccgagtgcacttgtcag aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgtgctaatgccact gttcctgacggagagtgctgcccccgctgtggaacaccgagtgactatgcagaggacggc tggtcgctgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag cgcgggcgctcctgtgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaaacgcttcaagcaggacggcggctggagccattgg tcaccctggtcttcctgctccgtcacctgtggttctggtgtcatcacccatatccgcctc tgcaactcccccatccctcagctcggaggcaaggactgcgcgggagagggccgacaaaca gagaaatgtcagatgtctccatgccccatcaatggcaactgggggccctggtcaccatgg gatacctgcactctcacctgtggaggtggtgtccagactcgtaaacgcctgtgcaatgac cctggaccaaaatacggaggaaaagagtgtgttggtgaagccaaagacactcagatgtgt aacaagaaagcctgccccatcgatgggtgtctgtccaacccttgctttgctggggcaaag tgcaccagtttccctgatggttcctggaaatgtggcaagtgtccagctggctacgccggc aatggtgtcaagtgcaaagacgtcgatgagtgcaaggaggtgccagatgcttgctttgag tttaatggcgtgcaccgctgtgagaacacagaacctggctacaactgtctgccctgccct cctcgctactctggaccccagccctttggaagaggcgtggagtacgctgctgcaaacaaa cagatgtgcacacctcgtaatccctgcctcgatggaagtcacgactgcaacaaaaatgcc cgctgcaactacctcggacacttcgctgatcccatgttccgctgtgagtgcaggcctggt tatgctggcaatggtcatatctgtggagaggacacagatctggatggatggcccaacgcc gacttggtttgtgtggagaacgccacctaccactgcaaaaaggacaactgccccaacctt ccgaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacagtgat gatgacaatgatggaattcctgatgatagggacaactgtccatttgtcttcaacccccgg caatatgattatgatcgtgacgatgtgggtgaccgctgcgataactgcccctacaacagt aacccagaccagaccgacacagacaacaacggggagggagatgcctgtgctgtggacatc gatggagatggtatactaaatgagaaggacaactgtccccttgtgtacaatgttgaccag agagacacagatctggacggcgtaggagacatgtgcgataactgccctctggaacataat cctgatcaggtggattcagatgatgaccgtgtgggagacaagtgtgacagcaaccaggac attgatgaggatggacatcaaaacaatctggacaactgcccctacatccccaatgccaat caggctgatcatgacaaggacggcaagggcgacgcctgtgaccatgatgacgacaatgat ggcatccctgatgataaggacaactgcagactggccttcaaccctgaccaactggacact gatggtgatggccgtggagatgcttgcaaagatgactttgaccaggacaatgtccctgac atctatgatgtgtgtcccgaaaactttggcattagtgagacagacttccgccaattccag atggttcccttggacccaaaaggcacctcccagattgatcctaattgggttgtccgccat cagggcaaggagctcgttcagactgtcaactgcgaccctggcattgctgttgggtaccat gagttcaatggagtggacttcagtgggactttcttcatcaacacagagagggatgatgat tatgccggcttcgtatttggctaccagtccagttccaggttctatgtggtgatgtggaag cagattacacaaacctactggtcaaataaacccaccaaggcccagggctattctggcctg tccattaaggtggttaattccaccaccggtccaggagagcacctcagaaatgccctttgg cacactgggaatacccctggacaagtccgcactctctggcatgaccccaagaatgttggt tggaaagacttcactgcctacagatggcatctcatccacagaccaagaacaggtcatatt agagttgtgatgtacgaaggcaaaaagatcatggcagattctggaagcatctatgacaag acatatgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca gacctcaagtatgaatgcagagatgcataa

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