Scophthalmus maximus (turbot): 118300833
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Entry
118300833 CDS
T09850
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04010
MAPK signaling pathway
smau04020
Calcium signaling pathway
smau04510
Focal adhesion
smau04518
Integrin signaling
smau04519
Cadherin signaling
smau04540
Gap junction
smau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118300833
04020 Calcium signaling pathway
118300833
09133 Signaling molecules and interaction
04518 Integrin signaling
118300833
04519 Cadherin signaling
118300833
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118300833
04540 Gap junction
118300833
09142 Cell motility
04810 Regulation of actin cytoskeleton
118300833
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smau01001
]
118300833
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smau04090
]
118300833
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118300833
Protein kinases [BR:
smau01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118300833
CD molecules [BR:
smau04090
]
Proteins
118300833
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
VEGFR1-3_N_Ig-like
Ig_2
ig
C2-set_2
Ig_VEGFR-1-like_5th
V-set
VEGFR-1-like_Ig-like
Baculo_11_kDa
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
118300833
NCBI-ProteinID:
XP_035481546
LinkDB
All DBs
Position
2:26218852..26230484
Genome browser
AA seq
1035 aa
AA seq
DB search
MMASIRGQTGSLNLLHFLLGVFLVHPEGGVCLELQPSISEVLLDSHTNFTVVCSGWSQVT
WRFPQDSPLDEVVVESRGSSSVLQLVNVTWRNSGRYTCEEMSSHQCRDVDIFIPGRGPDE
WFVPLGPGVVMKETEDATIPCVVSDPKLNVSLFERPGRMPVSRVTYEPGRGFTGRLNDTS
YVCLAARGGEERESQVYYVFSIVVPQVMEVDLSVSSSVLRQGEVLTVNCTVTETQRVFFS
WDFPRRQEVEPLNDFLPNQIRSFINISMATVADTGVYVCAVQDTMEGRTVTKNITVTVLD
QGYVYLWPSGETNVSSLVHHTVEFSVEVDAHPAPTITWTRDNQTAAMETTSVTTTRLMGS
RYLSKLTLVRVQMHQTGSYTATASNDDAVEELVFVLEVKAPPRITSLSEVGSKSVLCVSE
GAPPPSVTWYTCQNTHRCSNVTGSWRSLSAASRGVTLQENVTEVKERGVTQVRSVLTLQA
LTSLSAVRCEVKNSAGRRARDLRVLSPSLLSQVAVLAAVLVLVVIAIFFLIVLIILWRKK
PRYESRWKVIESVSPDGQQYTYLDPAHLPYNSTWEIPRDSVVLGQVLGSGAFGRVVEANV
SGLIHSHSTTKVFVKMVKPSSGAVQSLMSDLKVLVHLGPHLNVVNLLGACTRGGPVYLIT
ECCRHGDLVNYLQRNKHTFLQSDPHTKSDSDGGYMDMSKEEAAQYVAMKELSCADIEPAL
YETPCTPADQQEASSLLLSDSPLLNLRDLLSFSYQISQAMDFLSSRNCVHRDLAARNVLV
CEGKLVKVCDFGLARDLMKDQDYIARGNSFLPLKWMSPESIVQSIYSAQSDVWSYGVLLW
EIFSLGGSPYPDLPMTQEFYSALKNGYRMSRPEHAPHNIFELMTQCWEAEPHSRPTFSSL
VVSVGNLFTDEHNERYLQLTENFLKGENPAVVRSRLSLSRAAEDQTDTSHESPAAQVKRL
PSEAGSEEAGPSQGTYIIPISDITIETSSDTALDADGLHLSGAPGPQEVMSPEGKQEAVE
PPAPSSSRKEEESCL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttccatccgaggacaaacaggaagtctgaaccttctgcacttcctgttaggt
gtgttcctggttcatcctgaagggggcgtctgtctggagcttcagccgtcaatctctgaa
gttctgctggactcacacaccaacttcactgtggtgtgctccggctggagtcaggtgaca
tggcggttccctcaggactctccgctagacgaggttgtcgtggagagtcgcgggtccagc
agcgtcctgcagcttgtcaacgttacctggaggaattctgggagatacacctgtgaggag
atgtcgtcccatcagtgcagagatgtagacatcttcatacctggacgaggtccggatgaa
tggtttgtcccgttgggtccaggtgtggtgatgaaggagacggaggacgctaccatcccc
tgcgtggtgtcagaccccaagctcaacgtctcgctgttcgaacgccccggcaggatgcca
gttagcagggtgacgtacgagccgggtcgcggtttcacgggtcgtctgaacgacacgtcg
tacgtgtgcctggccgcccgcggaggcgaggagcgggagtcccaggtgtactacgtcttc
agcatcgtagtccctcaagtgatggaggtggacctgtctgtgtctagcagtgtgttgaga
cagggggaggttctcactgtgaactgcaccgtcacagaaactcagagggttttcttctcc
tgggacttcccccgcagacaggaagtcgagccgctcaacgactttctgcccaatcagatc
cgttccttcattaacatctccatggcgacagtggcagacactggtgtgtatgtgtgtgca
gtgcaggacacgatggagggaagaactgtgacgaaaaacatcacagtgacagtactggat
caaggttacgtctacctgtggccttcaggtgagaccaacgtgtcgtctctcgtccatcac
acggtggagttcagcgtggaggtcgacgcccatcccgcccccaccatcacctggaccaga
gacaaccaaactgctgccatggaaaccacctccgtcaccaccactcgcctgatgggaagc
aggtatttaagcaaactgacgctggttcgagtccagatgcatcagacaggaagttacaca
gcaactgcttctaacgacgacgccgtcgaggagctcgtctttgtccttgaggtcaaagca
ccccccaggatcacgtccctgtcagaggtcggcagtaagtcagtgttgtgtgtcagcgag
ggagctccacccccctctgtcacctggtacacctgtcaaaacacacacaggtgcagtaac
gtgacgggcagctggaggagcctatcggcagcctcaaggggcgtgaccctgcaggagaac
gttactgaggtgaaggagagaggcgtcacccaggtgcgcagtgtgttgactctacaggct
ctcacctctttgtcagctgttcgctgtgaagtgaagaattctgcaggacgacgagcgaga
gacctgcgagtactgtccccctctctcctgtctcaggttgcagtactagcagcagttctg
gttttggtcgtcattgccatcttcttcctcatcgtcctcatcatcctctggagaaagaaa
cctcgttatgagtctcgctggaaggtgattgagtcggtgagtcctgatggacagcagtac
acctacctcgaccccgcccacctgccctacaactccacctgggaaataccacgagacagc
gtagtactaggtcaggtgctgggttcaggtgccttcggtcgtgtcgttgaagcgaacgtt
tccggtctgattcattcgcattctacaactaaagtatttgtgaagatggtcaaaccgagc
agcggggcggttcagtctctgatgtcggatttgaaggttttggttcatctcggtcctcac
ctgaatgtcgtcaacctgctgggagcctgcaccagaggaggacctgtctatctgatcacc
gagtgctgtcgccatggagacctggtgaactacctgcagaggaacaaacacaccttcctg
cagagtgacccacacaccaagagcgacagtgacggaggctacatggacatgagtaaagag
gaggctgctcagtacgtcgccatgaaggagctcagctgcgccgacatcgaacctgcattg
tacgagacgccgtgcacaccggcagaccagcaggaggcgtcatctctcctcctcagcgac
tcccctctcctcaacctccgtgacctcctcagcttctcctaccagatctctcaggccatg
gacttcctttcctccagaaactgcgtccacagagacctggcagcgaggaacgtcctggtc
tgtgaaggaaagctggtgaaggtctgtgactttggtttggcccgggacctgatgaaggac
caggactacatcgccagaggaaacagcttcctgccgctcaagtggatgtcaccagagagc
atcgtccagagcatctacagcgctcagagcgacgtctggtcctacggagtcttactgtgg
gagatcttctctctgggtgggagtccgtaccccgacctccccatgacccaagagttttac
tctgctctgaagaacggatacaggatgagtcgacctgagcacgctccacacaacatcttt
gagctgatgacacagtgctgggaggcggagcctcattccagacctaccttctcttcgctc
gtcgtctcggtgggaaacttgttcactgacgaacacaacgagcgttacctgcagctgaca
gagaacttcctgaaaggtgaaaatccagctgttgttcgatccagactgagtttatccaga
gctgctgaggatcagacagacacatcacacgaaagccctgccgctcaggtgaaacgtctg
ccatcagaggcggggtcagaggaggcaggtccctcccaaggtacttacatcatccccatc
tctgacatcaccatagaaacgagcagtgacactgcgctggacgcagacggccttcacctt
tcaggtgcacctggaccacaggaagtgatgtcaccagagggtaaacaggaagctgtggag
cctcctgctccatccagcagccgaaaggaagaggagagctgcctgtga
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