Scophthalmus maximus (turbot): 118300833
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Entry
118300833 CDS
T09850
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04010
MAPK signaling pathway
smau04020
Calcium signaling pathway
smau04510
Focal adhesion
smau04540
Gap junction
smau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118300833
04020 Calcium signaling pathway
118300833
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118300833
04540 Gap junction
118300833
09142 Cell motility
04810 Regulation of actin cytoskeleton
118300833
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smau01001
]
118300833
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smau04090
]
118300833
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118300833
Protein kinases [BR:
smau01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118300833
CD molecules [BR:
smau04090
]
Proteins
118300833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
VEGFR-1-like_Ig-like
Baculo_11_kDa
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
118300833
NCBI-ProteinID:
XP_035481546
LinkDB
All DBs
Position
2:26218852..26230484
Genome browser
AA seq
1035 aa
AA seq
DB search
MMASIRGQTGSLNLLHFLLGVFLVHPEGGVCLELQPSISEVLLDSHTNFTVVCSGWSQVT
WRFPQDSPLDEVVVESRGSSSVLQLVNVTWRNSGRYTCEEMSSHQCRDVDIFIPGRGPDE
WFVPLGPGVVMKETEDATIPCVVSDPKLNVSLFERPGRMPVSRVTYEPGRGFTGRLNDTS
YVCLAARGGEERESQVYYVFSIVVPQVMEVDLSVSSSVLRQGEVLTVNCTVTETQRVFFS
WDFPRRQEVEPLNDFLPNQIRSFINISMATVADTGVYVCAVQDTMEGRTVTKNITVTVLD
QGYVYLWPSGETNVSSLVHHTVEFSVEVDAHPAPTITWTRDNQTAAMETTSVTTTRLMGS
RYLSKLTLVRVQMHQTGSYTATASNDDAVEELVFVLEVKAPPRITSLSEVGSKSVLCVSE
GAPPPSVTWYTCQNTHRCSNVTGSWRSLSAASRGVTLQENVTEVKERGVTQVRSVLTLQA
LTSLSAVRCEVKNSAGRRARDLRVLSPSLLSQVAVLAAVLVLVVIAIFFLIVLIILWRKK
PRYESRWKVIESVSPDGQQYTYLDPAHLPYNSTWEIPRDSVVLGQVLGSGAFGRVVEANV
SGLIHSHSTTKVFVKMVKPSSGAVQSLMSDLKVLVHLGPHLNVVNLLGACTRGGPVYLIT
ECCRHGDLVNYLQRNKHTFLQSDPHTKSDSDGGYMDMSKEEAAQYVAMKELSCADIEPAL
YETPCTPADQQEASSLLLSDSPLLNLRDLLSFSYQISQAMDFLSSRNCVHRDLAARNVLV
CEGKLVKVCDFGLARDLMKDQDYIARGNSFLPLKWMSPESIVQSIYSAQSDVWSYGVLLW
EIFSLGGSPYPDLPMTQEFYSALKNGYRMSRPEHAPHNIFELMTQCWEAEPHSRPTFSSL
VVSVGNLFTDEHNERYLQLTENFLKGENPAVVRSRLSLSRAAEDQTDTSHESPAAQVKRL
PSEAGSEEAGPSQGTYIIPISDITIETSSDTALDADGLHLSGAPGPQEVMSPEGKQEAVE
PPAPSSSRKEEESCL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttccatccgaggacaaacaggaagtctgaaccttctgcacttcctgttaggt
gtgttcctggttcatcctgaagggggcgtctgtctggagcttcagccgtcaatctctgaa
gttctgctggactcacacaccaacttcactgtggtgtgctccggctggagtcaggtgaca
tggcggttccctcaggactctccgctagacgaggttgtcgtggagagtcgcgggtccagc
agcgtcctgcagcttgtcaacgttacctggaggaattctgggagatacacctgtgaggag
atgtcgtcccatcagtgcagagatgtagacatcttcatacctggacgaggtccggatgaa
tggtttgtcccgttgggtccaggtgtggtgatgaaggagacggaggacgctaccatcccc
tgcgtggtgtcagaccccaagctcaacgtctcgctgttcgaacgccccggcaggatgcca
gttagcagggtgacgtacgagccgggtcgcggtttcacgggtcgtctgaacgacacgtcg
tacgtgtgcctggccgcccgcggaggcgaggagcgggagtcccaggtgtactacgtcttc
agcatcgtagtccctcaagtgatggaggtggacctgtctgtgtctagcagtgtgttgaga
cagggggaggttctcactgtgaactgcaccgtcacagaaactcagagggttttcttctcc
tgggacttcccccgcagacaggaagtcgagccgctcaacgactttctgcccaatcagatc
cgttccttcattaacatctccatggcgacagtggcagacactggtgtgtatgtgtgtgca
gtgcaggacacgatggagggaagaactgtgacgaaaaacatcacagtgacagtactggat
caaggttacgtctacctgtggccttcaggtgagaccaacgtgtcgtctctcgtccatcac
acggtggagttcagcgtggaggtcgacgcccatcccgcccccaccatcacctggaccaga
gacaaccaaactgctgccatggaaaccacctccgtcaccaccactcgcctgatgggaagc
aggtatttaagcaaactgacgctggttcgagtccagatgcatcagacaggaagttacaca
gcaactgcttctaacgacgacgccgtcgaggagctcgtctttgtccttgaggtcaaagca
ccccccaggatcacgtccctgtcagaggtcggcagtaagtcagtgttgtgtgtcagcgag
ggagctccacccccctctgtcacctggtacacctgtcaaaacacacacaggtgcagtaac
gtgacgggcagctggaggagcctatcggcagcctcaaggggcgtgaccctgcaggagaac
gttactgaggtgaaggagagaggcgtcacccaggtgcgcagtgtgttgactctacaggct
ctcacctctttgtcagctgttcgctgtgaagtgaagaattctgcaggacgacgagcgaga
gacctgcgagtactgtccccctctctcctgtctcaggttgcagtactagcagcagttctg
gttttggtcgtcattgccatcttcttcctcatcgtcctcatcatcctctggagaaagaaa
cctcgttatgagtctcgctggaaggtgattgagtcggtgagtcctgatggacagcagtac
acctacctcgaccccgcccacctgccctacaactccacctgggaaataccacgagacagc
gtagtactaggtcaggtgctgggttcaggtgccttcggtcgtgtcgttgaagcgaacgtt
tccggtctgattcattcgcattctacaactaaagtatttgtgaagatggtcaaaccgagc
agcggggcggttcagtctctgatgtcggatttgaaggttttggttcatctcggtcctcac
ctgaatgtcgtcaacctgctgggagcctgcaccagaggaggacctgtctatctgatcacc
gagtgctgtcgccatggagacctggtgaactacctgcagaggaacaaacacaccttcctg
cagagtgacccacacaccaagagcgacagtgacggaggctacatggacatgagtaaagag
gaggctgctcagtacgtcgccatgaaggagctcagctgcgccgacatcgaacctgcattg
tacgagacgccgtgcacaccggcagaccagcaggaggcgtcatctctcctcctcagcgac
tcccctctcctcaacctccgtgacctcctcagcttctcctaccagatctctcaggccatg
gacttcctttcctccagaaactgcgtccacagagacctggcagcgaggaacgtcctggtc
tgtgaaggaaagctggtgaaggtctgtgactttggtttggcccgggacctgatgaaggac
caggactacatcgccagaggaaacagcttcctgccgctcaagtggatgtcaccagagagc
atcgtccagagcatctacagcgctcagagcgacgtctggtcctacggagtcttactgtgg
gagatcttctctctgggtgggagtccgtaccccgacctccccatgacccaagagttttac
tctgctctgaagaacggatacaggatgagtcgacctgagcacgctccacacaacatcttt
gagctgatgacacagtgctgggaggcggagcctcattccagacctaccttctcttcgctc
gtcgtctcggtgggaaacttgttcactgacgaacacaacgagcgttacctgcagctgaca
gagaacttcctgaaaggtgaaaatccagctgttgttcgatccagactgagtttatccaga
gctgctgaggatcagacagacacatcacacgaaagccctgccgctcaggtgaaacgtctg
ccatcagaggcggggtcagaggaggcaggtccctcccaaggtacttacatcatccccatc
tctgacatcaccatagaaacgagcagtgacactgcgctggacgcagacggccttcacctt
tcaggtgcacctggaccacaggaagtgatgtcaccagagggtaaacaggaagctgtggag
cctcctgctccatccagcagccgaaaggaagaggagagctgcctgtga
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