Scophthalmus maximus (turbot): 118309985
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Entry
118309985 CDS
T09850
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118309985 (tardbpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118309985 (tardbpb)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
118309985 (tardbpb)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
118309985
NCBI-ProteinID:
XP_035488574
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Position
6:11376913..11380966
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AA seq
410 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
VLHAPENGWGNVVYVVNYPKDNKRKMEEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYDCQEKVVSQRHMIDGRWCDCKLPN
SKVDMSFWLQQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAF
VTFGDDQVAQSLCGEDLIIKGVSVHISNAEPKHGNRQFDRATRFGNGFGAQAFGSSRSGL
GSSSNSSLANFGSFSLNPAMMAAAQAALQSSWGMMGMLASQQQTSTSGSTSSGTSSSRDQ
SQSFSTGNSNYGTSSASLGWGTGSNSTTSGSGFSSGFGSSMESKSSGWGM
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtgtacattcgagtagcggaggaggagaacgaagaacccatggagatcccg
tccgaggatgacggcactgtcctactctcaaccgtggcagctcagttccccggggcgtgc
ggcctgcgcttcaggagccccgtgtcacagtgcatgcggggggtccgtctggtggagggg
gtcctgcacgcaccagagaacggatggggcaacgtcgtgtatgtcgtgaactatccaaag
gacaacaaaagaaaaatggaagagatagatgcctcttctgcagtgaaaatgaagagaggg
gatatgaagacatcggacctgattgtactgggtctaccttggaaaacgactgagcaggac
ctgaaagactactttagtacatttggagaagtcatcatggttcaggtaaaacgagatgcc
aaaactggaaactcaaaaggatttggctttgtgaggttcacagagtacgattgtcaagaa
aaggtggtctcccagcgtcacatgatcgacgggagatggtgcgactgcaagctcccgaac
tcgaaggtagatatgtccttttggttacagcaaggtccagatgagccactgaggagccgc
aaagtttttgttggccgttgcacagaagacatgaccacagacgacctacggcagttcttt
atgcagtatggagaagtcacagatgtcttcattcccaagccattccgtgcttttgccttc
gtcacatttggagatgatcaggttgcccagtctctctgtggagaggacctaattatcaaa
ggtgtcagcgttcacatctcaaatgctgagcccaaacatggcaataggcagtttgaccgc
gcaacgcggtttgggaatggttttggagcgcaggcgtttggtagcagccgtagtgggtta
gggagtagcagtaacagtagtctggctaatttcggttccttcagtctgaaccctgccatg
atggctgccgctcaggctgccctgcagagtagttgggggatgatgggtatgttagctagc
cagcagcagacgtcgacctcaggcagcacctccagtggaacaagctctagcagggaccag
agtcagtctttcagtacaggcaacagcaactacggcaccagctcagccagtctcggctgg
ggaacggggtcaaactcgacgactagtggtagtgggtttagctcaggttttgggtcaagt
atggagtcaaagtcatctgggtggggtatgtaa
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