Scophthalmus maximus (turbot): 118311619
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Entry
118311619 CDS
T09850
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118311619 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smau03400
]
118311619 (lig4)
Enzymes [BR:
smau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118311619 (lig4)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118311619 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
118311619
NCBI-ProteinID:
XP_035491535
LinkDB
All DBs
Position
1:23976817..23981825
Genome browser
AA seq
910 aa
AA seq
DB search
MEGTSKSDDADEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKVLGDFIESWRKFHSALHK
DKTKITESFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TISQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAANNAGKLKDLVKKNLLHLI
TQSSALEQKWLIRMILKDMKLGISRETVLRVYHPDAAELFNVNTDLKKVCQQLHNLSVSL
SDVSIGLFSSFKPMLAAVSNIRNVEKQMSNSQFYVQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTENFMQKGSKFDIKRLA
DDSELQTCFCVFDVLLVNDQKLGKETLKKRCDIIETVFTPLKGRIHLVPKTEARTMQEVV
NALNDAIDNRDEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAESQKPGEKPSIFHTLCRIGSGYTMKELYDLGLKLAKHWKVFRKNDPP
ASILCGTEKPEAYIEPCHSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLFISDEEPQKKKRKPVVRPKKVVGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKVDLETGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLILSN
QHDMVWASWLLECLDQKEVVPWQPHHMIHMSPSTREHFAKEYDGYGDSYFVDTDERRLRD
VFGRMRSGDVQAAVRVEQVEQRYSWGDLPTSMFRPFRVYMDSGADREDAGTAAPATCLDI
RALEFRYHGGTVVQKLEEGVSHVIVAVETRVLDLRTLRRGFRRKFKIVRESWVTDSIKAG
YLINDNDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctccaaaagcgatgatgctgatgagccatctgttgcagcacaggttcct
ttccttcacctgtgcactactttagagaaaatccagaagtctaaactccgtccagataaa
tccaaggttcttggggatttcatcgagtcatggaggaagtttcattctgccctccacaaa
gacaagaccaaaataacagaatctttctacccagccatgcgcctcatagttccctctttt
gaacgtgaacggatggcatatggcatcaaagagagcatgttggctaaactgtacatcgac
gtgttgggcctcccaaagaatggcccagaggccaataaacttctgaactatagagccccg
actatttcccaaggagaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cgctgcaccagccagggaaacctcagcatcaaagaagtcaatgactttttggactcggtg
gctgccaacaacgctggcaagctgaaggatcttgtcaaaaagaatctgctgcacctcatc
acccagagttcggctcttgagcaaaagtggctcatcagaatgatcctgaaggacatgaaa
ctcggaatcagcagggagaccgttctccgtgtctaccacccggatgctgctgagctcttc
aacgtcaacacggacttgaaaaaggtgtgccagcagcttcacaacctgtcagtgtcttta
agcgacgtctccattggacttttctcctccttcaagcccatgttggcagctgtgtctaac
atccgtaatgtggagaaacagatgagcaacagccaattttacgtccagacaaagctggac
ggggagcgcattcagctgcacaaagacggagacgtgtataaatacttcagtcgaaatgca
ttcgagtatacgcagcagtttgggggatcgccgctggagggctcgctgacaccttacatc
cacaatgttttcaaaagccacgttgttaactgtatcctcgacggtgagatgatggcgtac
aacccgaccacagagaacttcatgcagaaagggagcaagtttgacataaagaggctggcg
gacgactctgagttacagacatgtttctgtgtgttcgacgtgttactcgtcaacgaccaa
aaacttggtaaagaaacactgaagaagcgctgcgatatcattgagacagttttcaccccg
ctcaagggacggatacacctggtgccgaagaccgaagccagaaccatgcaggaggtggtg
aacgccctcaatgatgccatagacaacagagacgaggggatcatggtgaaggacccttta
tccatctacaaacctgacaaacggggggaagggtggctgaaaataaagccagaatatgtt
gacggcttgatggatgagcttgacttgctgattgttgggggctactgggggaaagggaga
cggggcggtatgatgtcccatttcttatgtgctgtcgctgaaagtcaaaagcccggcgag
aaaccttccattttccacaccctctgccgcatcggctccggctacaccatgaaggagctg
tacgacctcggtttaaagctagccaagcactggaaggttttccgtaaaaatgacccgccc
gcgtccatcctgtgcggaacggagaagccggaagcctacatcgaaccctgccactcagtc
atcatccaagtgaaggcggctgagatagttgggagtgacatgtacaaaaccaactgtacc
ctgcgcttcccgaggatcgagaagatccgcgatgacaaagagtggcaccagtgtatgacc
ctggcggaactagatcagttccgcagcaaggcgtcggggaaacttgcctcaagacacctc
ttcatcagtgacgaggaaccgcagaagaagaagcgcaagccggtagtgaggcccaagaag
gtggtcgggatcatcgaccacttcaagccccaggacctctccggggttaccaaggagacg
gatatgttcgaagatgtggaattctgcatcctaaatggcacagaggatcatcccaaggtg
gatctagaaacgggggtagccaggtgcggaggaatcgtggtacaaaaccctggacgggac
acctactgcgtggtcgccggcgtggagaacatgcgcgtcaaaaacctgatcttgtccaac
cagcacgacatggtgtgggcctcctggctgctggagtgcctggaccagaaggaagtggtc
ccgtggcaaccacaccacatgatccacatgtcaccgtccacccgcgagcactttgcgaag
gagtacgacggctacggcgacagctactttgttgacacggacgagcggcggctgcgagat
gtgtttggccggatgcgcagtggggacgtgcaggcggccgtgagagtagagcaggtggag
cagcgttacagctggggcgaccttcccaccagcatgttcagacccttcagggtttacatg
gacagcggtgccgacagggaagacgctggaaccgctgcacccgccacctgtttggacatc
agggcgctggagtttcgctaccacggtgggacagtcgtgcagaagctggaggagggcgtc
tctcatgtcattgtcgccgtagaaacaagagttctggatttgaggactctgaggcgaggg
ttcaggaggaagtttaagattgtaagagaatcatgggtgacggattcaatcaaagcaggc
tatctgattaatgacaacgattacttggtgtga
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