Scophthalmus maximus (turbot): 118312348
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Entry
118312348 CDS
T09850
Name
(RefSeq) slit homolog 1 protein-like isoform X1
KO
K06838
slit 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118312348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smau00536
]
118312348
Glycosaminoglycan binding proteins [BR:
smau00536
]
Heparan sulfate / Heparin
Axon guidance molecules
118312348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
EGF_TEN
LRRNT
LRRCT
LRR_1
LRR_14
LRR_9
hEGF
EGF_Teneurin
EGF_CA
LRR_LRWD1
EGF_MSP1_1
EGF_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118312348
NCBI-ProteinID:
XP_047189661
LinkDB
All DBs
Position
8:1621941..1663765
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AA seq
1655 aa
AA seq
DB search
MSCCSSSQPLDTSLSTSSPPAEGATSPVVVTRSEAKDLRRRIFSRMPGARGGGCGTAAGA
PGRALGSGLRVALPWGVAVLLLLLVAGARAEACPAPCSCLGNTVDCHGLGIHAVPRNIPR
GTERLDLNGNNLTLVAKSDFSGLKHLRVLHLMENQIGNVERGAFDELRELERLRLNKNHL
IQLPELLFQKNEALSRLDLSENGIQAIPRRAFRGATDLKNLQLDKNHISCIEEGAFRALR
SLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNSLRCDCHLAWLSPWLRQRPALGLYTQ
CSSPPTLRGLNLAELRKNDFACSGHGGSAFVQPCSLASGSCPPMCSCSNNIVDCRGRGLT
AIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLRRIDLSNNQISEIAPDAFHGLKALNS
LVLYGNKITELPGGVFDGLASLELLLLNANKIHCIRATVFKDLENMALLSLYDNKIQSLA
KGTFSSLHSIQTLHLAQNPFVCDCNVKWLADFLRSNPIETSGARCASPRRLANKRIAQIK
SNKFRCSAKEQYHIPGTEDRRQSYECNSKPVCPAKCRCEANVVDCSNLRLTKFPEHLPSS
TEELRLNNNDLSVLEATGAFKGLSQLKKINLSNNKISDIEDGAFDGASSVVELHLTANHL
ESVRGSMLKGMEGLRMLMLRNNRISCIHNGSFSGLTNVRLLSLYDNQLSTILPGAFDTLP
NLSTLNLLANPFNCDCRLSWFGAWLRSRRIVTGNPRCQGPAFLREIPLQDVAVPDFRCED
GSVLDDSRCAPGPQCPNQCTCMDTVVRCSNKHLQGLPRGLPRNVTELYLDGNQFTSVPKD
LASFKYLQLVDLSNNKISSLSDDSFSNMSQLTTLILSYNSLRCIPPLALGGLRSLRLLSL
HGNDISELQQGIFSDVASLSHLAIGANPLYCDCRLLWLSDWVKSGYKEPGIARCAGPRGM
EGKLLLTTPADKFQCLGPVEASVKAKCSPCVSSPCLNQGVCQVHDTLPYTCTCKAGFTGK
HCETPIDACFSNPCTNGGTCLSDEQTRGFSCACAFGFHGTFCDVNVDDCQDHGCENGATC
VDGVGNYTCLCSPNYTGLFCEEEEGPCSPGRNPCQHQSTCVSTPTGPRCVCIPGWVGPDC
GIDYDECVDHRCQNGAQCVDHLDGYSCVCAQGYSGPLCEVALVAAPPSPCQLARCQNGAA
CAEKTGGGAACQCLPGFEGPRCEKLVSVNFVDRDSYVELQDVKNWPQANITLQVSTAEDN
GILLYNGDDEPIAVELHQGHVRVTYDPGNQPATAIYSTETVNDGSFHTVELVTFNRMVNL
SVDGGEPTTLDSQGRSQLATGEAPLYVGGMPEEVMPGSLGRLSSQTLNASSFHGCIRNLY
INHELQDFTRSHMKPGVVPGCQACRKLYCLHGICQPDAAQGPQCHCQLGWTGQHCDQPIA
GGLSAVDAVTTATGVSPCQGSKCVNGACVALDAQTYRCECAEGYRGALCNLQGEPAAACQ
GLQCLHGQCEQTEEGESCVCERGYTGAGCDIESPCRGEQVRDYHRLQRGAVLCQTSKTFS
WVECRGRCQAGAGPPGGGAPCCAPLRVRRRRLAFECDDGTSFAQDVEKPVECGCKESSVC
LHLCVLLLGGDSSQENKGTNLSESKRFHRYILTYF
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgagctgctgcagctcgtctcagcctcttgacacgtctctgtccacttcttctcctcct
gctgaaggagcgacatcaccggtggtggtcactcggtccgaggcgaaggatctgcgccgc
aggatatttagcaggatgcctggcgcgagaggaggaggctgtgggacggcagccggggcc
ccgggccgggctctcgggtccgggctgcgggtggcgctgccgtggggcgtcgcggtgctg
ctgctgctgctggtggctggtgcgcgtgcggaggcgtgtcccgctccgtgcagctgcctg
gggaacacggtggactgtcacggcctggggatccacgccgtgcccaggaacatcccccga
ggcaccgagaggctcgatctgaacgggaacaacctgacgctcgtcgccaagtcggacttc
tctggtctcaaacacctccgagtccttcacctgatggagaaccagatcggtaacgtcgag
cggggagcgtttgatgagctgagggagctggagagacttcgtctcaacaagaaccatctc
atccaacttccagagctgctgtttcagaagaacgaagctctgtctcgactggacctgagt
gaaaacggcatccaggccatcccgaggagagcgttcagaggagccacggacctcaagaac
cttcaactggataaaaaccacatcagctgtatcgaggagggggcgttccgagctctgcga
tccctggaagtcctcacgctgaacaacaacaacatcagcagtattccagtctccagtttc
aaccacatgccgaagctgcgcaccttccgtctccactccaactccctgcgctgcgactgt
cacctggcctggttgtctccgtggctgcggcagcgtccggcgttgggcctctacacgcag
tgcagctcccctcccacgctcaggggcctcaacctcgccgagctgcgcaagaatgacttt
gcctgctcaggccacggcggcagtgccttcgtgcagccgtgcagcctggcgtccggctcc
tgtccgcccatgtgctcctgcagcaacaacatcgtggactgtcgggggaggggcctcacc
gccatccccgcccacctgcccgaggccatgacggagattcgtctggagcagaacggcatc
aagtcggttcctccgggcgccttcacctcctacaagaagctgcgacgaatagacctgagt
aacaaccagatatccgagatcgctccagatgctttccacggcctcaaagctctcaactcg
ctggttctgtacggtaacaagatcacggagctgcccggcggcgtgttcgatggcctcgcc
tcgctggagctgctgctgctgaatgccaataagatccactgcatcagggccacggtgttt
aaagacctggagaacatggctcttctgtcgctgtacgacaacaagatccagagtttggcc
aaaggaaccttcagctccctgcacagcatccagacactccacctggcccagaaccccttc
gtgtgcgactgtaatgtgaagtggctggccgacttcctgcgctccaaccccatagagacc
agcggcgcccgctgcgccagccctcgccgcctcgccaacaaacgcatcgcacagatcaag
agcaacaagttccgatgctccgccaaagagcagtaccacatcccaggcaccgaggacaga
cgtcagagctacgagtgtaacagtaagccagtgtgtcccgccaaatgtcgctgtgaggcc
aatgtggtcgactgctccaaccttcgcctcaccaagttcccagaacacctgccctcctcc
accgaagagctgcgtctcaacaacaacgacctctccgtgctggaggccactggcgccttc
aagggcctgtcgcagctcaagaaaattaacctgagcaacaacaagatctcggacatcgag
gacggagcgttcgacggcgcctcctccgtggtggagctccacctcacagccaatcacctg
gagtccgtccgagggagcatgctcaaaggcatggagggcctgcgcatgctgatgctgagg
aacaaccgcatcagctgcatccacaacggcagcttcagcggtttgaccaacgtcaggctc
ctctcgctctacgacaaccagctgagcaccatcctgcccggggccttcgacaccctgccc
aacctgtccacgctgaacctcctggccaatcctttcaactgcgactgccgtctgtcctgg
ttcggggcctggctgcggagcaggcgaatcgtgacggggaaccctcgctgccagggcccc
gccttcctccgcgagatcccgctgcaggacgtggctgtgcccgacttccgctgcgaggac
ggctctgtgctggacgacagccgctgtgctccggggcctcagtgtccgaaccagtgcacc
tgcatggacacggtggtccgctgcagcaacaagcacctgcaggggctgcccagggggctt
ccccgcaacgtcaccgagctgtatctggatggaaaccagttcaccagcgttcccaaagac
ttggcctccttcaagtacctgcagctcgtagacctgagcaacaataagatcagctcgttg
tccgacgactccttctccaacatgagccagctcaccacgctgatcctcagctacaactcg
ctgcgctgtatccctccgctggcgctgggcggcctgcgctctctgaggctgctctctctc
catggcaacgacatctccgagctgcagcagggcatcttcagcgacgtggcctcgctatct
cacctagcgatcggagcgaaccctctgtactgtgactgccgtctgctctggctgtccgac
tgggtgaagagcggctacaaggagcccggcatcgcccgctgcgccggcccccgcggcatg
gagggcaagctgctgctcaccacgcccgccgacaagttccagtgtctgggtcctgtggag
gcgtctgtgaaggccaaatgtagtccgtgtgtgtcgtccccctgcctgaaccagggcgtc
tgccaagtccacgacacgctgccgtacacctgcacctgcaaggctggattcacgggtaaa
cactgtgagacaccgatcgacgcgtgtttcagtaatccctgcaccaacggaggaacctgc
ctgagcgacgagcagaccagaggcttcagctgtgcgtgtgcattcggtttccacgggact
ttctgcgacgtgaacgtggacgactgtcaggaccacgggtgcgagaacggcgccacctgt
gtggacggcgtcgggaactacacctgcttgtgttctccgaattacacaggtctgttttgt
gaagaagaggaggggccgtgttctccaggtagaaacccctgtcagcatcagtctacctgc
gtcagcactccgacgggccccaggtgtgtgtgtatcccaggctgggtggggccggactgc
ggcatagattatgacgagtgtgtggatcaccgctgtcagaacggagctcagtgcgtcgac
catctggacggttacagctgcgtctgtgcacagggatacagtggaccgctctgcgaggtg
gccctcgtcgccgctcccccgtcgccctgccagctggctcggtgtcagaacggcgccgcc
tgcgcggagaagacgggcggcggcgcagcgtgtcagtgtctgccgggcttcgagggtccg
cgctgcgaaaagctggtgagcgtcaacttcgtcgacagagattcgtacgttgagctgcag
gacgtcaagaactggccccaggccaacatcacgctgcaggtgtcaacagcagaggacaac
gggatcctgctgtacaacggagacgacgagccaatcgctgtggagctccaccagggtcac
gtcagggtcacctacgatcccgggaaccagcctgccaccgctatttacagcacggagaca
gtgaatgacgggagcttccacacggtggagctggtgacctttaaccggatggtgaacctg
tccgtggacgggggcgagcccacgactctggacagtcagggccggagccagctggcgacg
ggggaggcccccctgtacgtgggaggaatgccggaggaggtgatgcccggctccctgggc
cgtctctcctcgcagaccctcaacgcgtccagtttccacggctgcatccggaatctctac
atcaaccacgagctgcaggatttcacccgcagccacatgaagcccggcgtggtgccgggc
tgccaggcctgccgcaagctctactgcctgcacggcatctgccaacccgacgccgcgcag
ggccctcagtgtcactgtcagctgggttggacaggacaacactgcgaccagccaatagca
ggaggcctcagtgcagtggacgctgtcaccacggcaaccggcgtcagcccgtgtcaaggc
agcaagtgcgtgaatggcgcgtgcgtggcgctggacgcgcagacgtaccgctgcgagtgc
gcggaggggtaccgcggtgcgctgtgcaacctgcagggggagccggcggcggcgtgccag
ggtctgcagtgtctgcacggccagtgtgagcagacggaggaaggggagagctgcgtctgc
gagcggggatacacgggagccggctgcgacatcgagtctccgtgtcgaggcgagcaggtg
agagattaccaccggctgcagcgcggcgccgtcctctgccagacgtccaagaccttctcc
tgggtggagtgtcgcggccgctgccaggcgggagctgggccgccgggcggcggcgccccc
tgctgcgcccccctgagggtgcgacggcggcggctcgccttcgagtgcgacgacggcacc
tcgtttgcgcaggacgtggagaagcccgtggagtgcggctgcaaggagtcctccgtctgc
cttcacctgtgtgtgcttctgctcggcggcgactcgtcgcaggaaaacaaaggtactaat
ctgagcgagtcgaaaaggttccaccgttacattttgacatatttttaa
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