Scophthalmus maximus (turbot): 118317885
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Entry
118317885 CDS
T09850
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04270
Vascular smooth muscle contraction
smau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118317885 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
118317885 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smau04131
]
118317885 (arhgef1b)
Membrane trafficking [BR:
smau04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118317885 (arhgef1b)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
DUF2730
PDV_N
Motif
Other DBs
NCBI-GeneID:
118317885
NCBI-ProteinID:
XP_035502919
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All DBs
Position
1:15111452..15151858
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AA seq
1064 aa
AA seq
DB search
MSIIGAEDEDFENDLNDVVDDQCKHFDDIEKLKDRPTHLLVFMQHVFLQFDPAPMLCYLH
AELFRTFSTKETKKQFVEFYNTFLDKGAILRVAVPTNITYDWDRIRPDLLSEDTQKRYAQ
EVQSLQAAEVAKQLEDFRQKRMMGMTPNEAELIDVESHYPTDRIPMEMKEKSVAENLLDK
MSETQPTIVSDEEKCQSIFTAVAFYMKHLGVKTRAVDSKKSRGGFFRRQLVKNKKDESTK
TKPRGVFPGIPSWIAGNITAEVKPKVETEAEKDKVNQERKGPAPGRGSVTDAAILALPSR
KSASSGGSASVPGLDITDVLGNNISAATVSPESSHSDGLSSNLLEPPTLSDGGDVSPVGL
GGAVTIGELIPPSDTPTDENVEKDSRKVARSESARVDRHSSHRRGTSRAKQSRSRSDVDL
QPPSTTTTSPSPLTPQHLHPVEGPVFVPEGPGLSPTSPSPQLEEVEPRLLEFEHDPPNWR
DLASPEALPSLGKKETKRQEVINELFATEHAHVRMLSVLQMVFSKPLEREELLTSTELAA
IFPNLDEIIDMHYNFYENLKKLRLDDNFIVKSISTTVLNRFGGTEGDWFQKLTARFCSHQ
SWALVQIKSRQKKEPRFNSFIQEAESKPQCRRLQLKDIIPIEMQRLTKYPLLLENIAKNT
DDLTEKERIQQSAECCRKILNHVNEEVKVMENLLTLKDYQRRLDTSGLKPSNELYTEYKN
VDLTQKKMLYEGPLTWRVTKEKGIEVQCVLLGDLLVLLQRQDDKMVLKCQSKSNIAVQEG
KQMLSPIIKLDSVFLREVATDRKAFYVIFTWDSGAQIYELVAQSVGERKIWTDVIKTAVD
DLKKSGAPMRLNLPPGSGGCPSSPSTLTAPLSPTENGGLKSSSDQDKDSLTDDKLSDPRH
MLIDFLSDKGFDLIGHSNSDQEKVANSALDEVMSLKRLLVGSISLSEDSQPDEENGEDQS
QSPNQEMDSCQSTVSLCAEESQTTDGVAEEENDGSCEKEGAGTKGEDKRSISAPLVLSEE
RMEEVCRRLHSLEERLKRLQTVEERHHRLQEALSKFSLEGGNFQ
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcatcggggctgaagatgaggactttgagaatgatctgaatgatgtggtggat
gatcagtgcaaacactttgacgacatagagaagttgaaggatcggccgacacacctgctg
gtcttcatgcaacatgtgtttctacagtttgaccctgcacccatgctgtgctacctccat
gccgaacttttcaggaccttcagtaccaaagagaccaagaagcaatttgtggagttctac
aacaccttcctggacaagggtgcaattctcagagtggcagtgccaactaatataacctat
gattgggaccgaatccgtccagatcttctctccgaggacacgcaaaagcgctatgctcag
gaggtgcagagcctgcaggcggccgaagtggccaaacagctggaagatttcaggcagaag
aggatgatgggtatgacccccaatgaggctgagctgatcgacgtggagagccactatccc
accgaccgcatcccgatggagatgaaagagaagtctgtggctgagaacctgctggacaag
atgtctgagacacaaccaacaattgtctcagacgaggaaaaatgccaatccatcttcaca
gcggttgccttctacatgaagcaccttggggtcaaaaccagggcagtagacagtaagaag
tccagaggaggcttcttcaggagacaactggtaaagaataagaaggatgaatccacaaag
accaagccgaggggggtgtttcctggcatccccagctggattgcaggcaacattacagct
gaggtcaaacctaaagtggagactgaagcggaaaaggacaaagtgaatcaggagcgcaag
ggcccagctccgggcagaggctccgtgaccgacgctgcaatcctggccctccccagcagg
aagtcggcttccagcggaggctctgcctccgtacctgggctggatatcactgacgtcttg
ggcaacaacatcagtgctgccaccgtcagccccgagtcttcacacagcgatggcctctca
agcaatctcttagagcctccgaccctgtcagatgggggtgatgtgtcccccgtcgggctc
gggggtgcggtgaccattggggagctcatccccccgagcgacactcccaccgacgagaat
gtggagaaagacagtaggaaagtggcccgtagcgagagtgctcgcgtggaccggcactcg
tctcatcgccgtggcacttcccgggccaaacagtcccgctcccgtagtgatgtggacctc
cagccgccttctaccacgacaacatcaccttctccgctcactccccagcacctccatcct
gtcgagggaccagtttttgttcctgaagggccgggcctctccccaaccagcccctccccg
cagctggaggaggtggagccacgcctcctggaatttgagcatgacccgcccaactggagg
gacctggcctcccccgaagctctgcccagcctcggcaagaaggagaccaagagacaggag
gtcatcaacgagttgtttgccacagagcatgcccacgtgcgaatgctgagcgtccttcag
atggttttctctaagcccttggagagagaggagctcctgacctccaccgaacttgccgcc
atcttccccaacttggacgagatcattgacatgcactataacttctacgagaaccttaag
aaactgcgtttggatgacaacttcatagtcaaatccatcagcaccacagtactcaacagg
tttggtggtacagagggggattggttccagaaactgacagcccggttctgcagtcaccag
tcgtgggccttggtccagattaagagcaggcaaaaaaaagagccacgcttcaactccttc
atacaggaggcagagagtaagccccagtgccgcaggcttcaactcaaggacatcatacca
atagagatgcagagactgaccaagtacccgttactgctggagaatattgcaaaaaacaca
gacgacctgacggaaaaggagaggatccagcagagcgcagagtgctgccgaaagatcctc
aaccatgtcaatgaggaggtcaaagtgatggagaacctattgactctgaaggactaccag
cgtagattggacacgtcaggcctcaaaccaagtaacgagctttatactgaatacaagaac
gtcgacctgacacagaagaagatgctttatgaaggtcctctgacctggagagtcacaaaa
gagaaaggaattgaggtgcagtgtgtgctgctgggggacctgctggtgctgctccagagg
caggacgacaagatggtcctcaaatgccagagtaagagtaacatcgccgtgcaggagggc
aagcagatgctgagccccatcatcaagctagactcggtctttctccgtgaggtggccaca
gatcgaaaggccttctacgtgatatttacctgggacagtggcgctcagatctacgaactg
gtggctcagtctgttggagagaggaaaatctggactgatgtgataaagacagctgtggac
gatctgaagaagagcggagcacccatgaggttgaatctgcctcctggaagtggaggatgt
ccctccagtccctccacgctgactgctcctttgagcccgactgagaatggaggcttgaaa
agcagcagtgatcaagataaggacagcctgacagatgacaagttgtcagaccccagacac
atgctgattgatttcctttctgacaaaggcttcgacttgataggccactccaacagcgat
caggagaaggttgctaacagtgctttggatgaagtcatgtcgctgaaaaggctattggtc
ggcagcatcagtctatcagaggactcgcaacctgatgaagaaaacggagaggaccaatca
cagagccccaatcaagaaatggatagctgccaatcaacagtctctctgtgcgcagaggaa
agccagacaacagacggagtagcagaagaagagaacgacggcagttgtgaaaaagaaggt
gcggggacgaagggcgaggacaagaggagcatcagcgctcccctggtgctgtccgaggag
aggatggaggaagtatgcaggaggctccacagtctagaggaacgactgaagagattacag
actgtagaagagaggcaccacaggctgcaggaggcactttccaagttctcgctggaggga
ggtaacttccagtga
DBGET
integrated database retrieval system
