Scophthalmus maximus (turbot): 124850820
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Entry
124850820 CDS
T09850
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124850820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smau03000
]
124850820
Transcription factors [BR:
smau03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124850820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
124850820
NCBI-ProteinID:
XP_047192048
LinkDB
All DBs
Position
12:complement(25053978..25058245)
Genome browser
AA seq
487 aa
AA seq
DB search
MSIQPRRIRLKPWLLTQVNSARYPGLQWLGSEQRLFQIPWKHATRHTPTSDEDNTIFKAW
AQETGKYQEGVDEPDPAKWKANLRCALNKSREFQLKYDGTKETPVQPYKIYEVIEPLGNA
DCAAADDDEEMPNLMDLSINPRISGPSFSAFPPRSEVDPFGLSSSGTFGPHHVIPVPLLP
VTSDLQAQGQMVDQGNFVHTAGLPNRLQDLNSLPSVASVPPEPDLMEASSMGGIQNQGDP
QNHQPCKYDLLSSVPLTDLDLKFQYRGRITGSLTVSNPQGCRLYYGHLEPTPEQVDLFGP
VTLQQVLFPGTSELQNQKQRFYTNALLDVMDRGLILEIWEQDIYAIRLCQCKVFWSGPGI
PEQGPPNPMEREKKIRVFSLNDFLQGLILFHKGEAPNPPPFEIYFCFGEDWPDKKPKEKK
LIIVQVVPVVARILTEMFSGELSWSTDSIRLQISNPDVKDQTVEQFKELQRLLQSQQIQG
PWTPNVS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccagccccggaggatccgtctgaagccgtggctactgactcaggtgaacagc
gccaggtacccgggtctccagtggcttggttcagaacaacgactcttccagattccatgg
aaacacgccacacgccacacgccaacgtccgacgaagacaacaccatcttcaaggcgtgg
gctcaggagacagggaagtatcaggaaggcgtggacgaacccgatcccgccaaatggaag
gcaaacctccgctgcgctctgaacaagagccgagagtttcagctcaaatacgacggcacc
aaagagacgccggtccaaccgtacaagatctacgaggtcattgagccgctggggaacgca
gattgtgccgccgccgacgacgacgaggagatgccgaacctgatggacctatccatcaac
ccgaggatcagtggcccctccttcagcgcgttcccgcctcgttcagaagtggatccgttt
ggtttgtcttccagcggaacgtttggacctcatcacgtgatcccggtgcccctcctcccc
gtgacctctgacctccaggctcagggtcagatggtggatcaggggaacttcgtccacact
gcaggtcttcctaacagactccaggacctgaactctctcccctcagttgcctctgtgccc
cctgagccggacctgatggaggccagcagtatgggaggcatccagaaccagggggatcct
cagaaccaccaaccctgcaagtacgacctgctgagtagtgttccactaactgatctggac
ctgaagttccagtaccgtggccggatcacgggctctctgaccgtgagcaacccacagggc
tgccgactgtactacggacacctggagccgaccccagagcaggtggacctgtttggacct
gtcaccctgcagcaggtcctgttcccagggacgtctgagctccagaaccagaagcagcgg
ttctacaccaacgccttgctggacgtgatggaccgaggcctgatcctggagatctgggaa
caagacatctatgccattcgcctctgtcagtgtaaggtgttctggtctggaccgggaatc
cccgaacagggaccaccaaaccccatggagagggagaagaagatcagagtgttcagcctg
aatgacttcctgcaaggactgatcctgttccataaaggtgaagctccgaaccctccgcct
tttgagatctacttctgctttggggaggactggcccgacaagaagcccaaagagaagaaa
ctcatcatcgtccaggtggttcccgtagtggctcggattctgactgagatgttctctgga
gaactcagctggtccacagacagcatccgattacagatctcaaaccctgacgtgaaggat
cagacggtggagcagtttaaagaactacagaggcttctgcagagccaacaaatccagggg
ccctggacccccaatgtatcctga
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