KEGG   Shewanella marisflavi: CFF01_07420
Entry
CFF01_07420       CDS       T05400                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
smav  Shewanella marisflavi
Pathway
smav03030  DNA replication
smav03410  Base excision repair
smav03420  Nucleotide excision repair
smav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFF01_07420
   03410 Base excision repair
    CFF01_07420
   03420 Nucleotide excision repair
    CFF01_07420
   03430 Mismatch repair
    CFF01_07420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smav03032]
    CFF01_07420
   03400 DNA repair and recombination proteins [BR:smav03400]
    CFF01_07420
Enzymes [BR:smav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CFF01_07420
DNA replication proteins [BR:smav03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CFF01_07420
DNA repair and recombination proteins [BR:smav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CFF01_07420
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CFF01_07420
   MMR (mismatch excision repair)
    DNA ligase
     CFF01_07420
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CFF01_07420
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH DUF4796_N
Other DBs
NCBI-ProteinID: ASJ96433
UniProt: A0AAC9TYU7
LinkDB
Position
1707447..1709456
AA seq 669 aa
MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDVEYDRLMRRLQTLEAEHPEFALADSPTQ
RVGGEALSKFNQVTHLKPMLSLDNVFSEEEFSAFYKRINDKLPQTPAFCCEPKLDGLAVS
ILYRDGVFERAATRGDGNVGEDITENVRTIKSVPLRLRGTDFPPLLEVRGEVFMPKAAFE
AVNNKARERGEKLFVNPRNAAAGSLRQLDSKITASRALAFYAYALGVVEPETWSLETSHY
GQLMQLKLWGFPVSAEVKVCEDIPSMLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQSL
GFVAKAPRWATAFKFPAQEEITLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN
ADEIARLGVMIGDSVIIRRAGDVIPQIVAVIAEKRPSDAQDIQFPSQCPVCGSDVERIEG
EAVARCSGGLYCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLTAS
AITMLDRMGMKSATNLVNALEAAKSTTFARFLYSLGIREVGEATAANLANYFKTLEKLKQ
ADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDRLIEAGVHWPAIEEVAEESLSLKGQT
WVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDE
AELLTILGE
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgcaagctatacaagacgagattaaacagttaaccgacgagcttaatcagcacaactac
cgctactatgtcgatgatgcgccgtctatccctgacgtcgagtacgatcgtctcatgcgt
cgcctgcaaactctagaggcggagcatcctgagttcgcccttgccgactccccaacccaa
agggttggcggtgaggccttaagtaaatttaatcaggtgactcaccttaaacctatgctg
agtctggataacgtctttagtgaggaggagtttagcgccttctataagcggattaacgat
aagctgccacagacgcctgcattttgttgtgagcctaaactcgacggcctagcggtcagt
atcttgtaccgtgatggggtgtttgaacgcgccgcaacccgaggtgatggcaatgtgggc
gaggatattaccgagaatgttcgcaccattaaatctgtgccgttgagattaagagggaca
gattttccgccactgcttgaggtgcgcggtgaagtctttatgcccaaggccgcctttgag
gcggttaacaacaaggcgcgcgagcgcggagagaagttgtttgtgaatccgcgcaatgcc
gcggcaggcagcctgcgtcagctcgacagtaagatcactgccagtcgagccttagctttc
tatgcctatgcccttggagtcgtagagcctgagacttggtctttggagactagccattat
ggacagctgatgcagctcaaactgtggggtttcccggtcagcgccgaagtgaaggtctgc
gaagatatcccaagtatgctggcttactatcaggatatcctgacgcgccgcagcgaactc
gcttacgagatagatggtgtggtgctcaaggtgaatgatatcgcgcagcaacaaagttta
ggttttgtggctaaggcaccgcgttgggccaccgcctttaagttcccggcccaggaggag
atcactctgcttgaaggagtcgatttccaggtgggacgcactggcgccgtgaccccggtg
gcccgcttaaaacctgtgtttgtcggcggtgtcactgtgtcgaacgctaccctacataat
gccgatgaaatcgcccgccttggggtgatgataggggatagtgtgatcattcgccgcgcc
ggtgacgtgatcccgcaaattgtggctgtgatcgctgaaaagcgcccgagtgacgcccag
gatattcagtttccgtctcagtgccctgtgtgcggcagtgatgtggagcgcatcgaaggg
gaggccgtggctcgttgcagcggtggtctctactgtgaggcacagcgtaaagaagcgatc
aaacattttgcctcgcgtaaggcgttagatatcgatggcatgggcgataaggtggtcgag
cagttgatcgataaggagctggtggctagcccggctgatctgtttaaacttacggcttcg
gcgatcaccatgctagatcgtatgggcatgaaatcggctaccaatttagtcaatgcgctg
gaagcggccaaaagtaccacttttgcgcgttttctctattccttggggatacgagaggtg
ggtgaggcgaccgcggcaaacttggccaactattttaaaaccttggaaaaactgaagcag
gccgatgcggaaactttcatgaaggtggacgatgtcggtgtgattgttgctcagcatctg
gtgcactttttcgagcaaccccataatctagaggtgattgacagattaatcgaggccggc
gtgcattggcctgccattgaggaagttgccgaagagtcgctgtcacttaagggccagacc
tgggtattaaccggaacgctaacccaactcaatcgcaacgatgccaaagctaagttgcag
gcactaggtgccaaggtggctggcagtgtgtctaagaataccgattgtttggtggctggt
gaggcggcgggatctaagttaactaaggcgcaggagctgggcgttaaggtgatcgatgaa
gccgagctgttaactatcttgggcgagtaa

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