Sulfurimonas marina: FJR03_03930
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Entry
FJR03_03930 CDS
T08627
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smax
Sulfurimonas marina
Pathway
smax03030
DNA replication
smax03410
Base excision repair
smax03420
Nucleotide excision repair
smax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJR03_03930 (ligA)
03410 Base excision repair
FJR03_03930 (ligA)
03420 Nucleotide excision repair
FJR03_03930 (ligA)
03430 Mismatch repair
FJR03_03930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smax03032
]
FJR03_03930 (ligA)
03400 DNA repair and recombination proteins [BR:
smax03400
]
FJR03_03930 (ligA)
Enzymes [BR:
smax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJR03_03930 (ligA)
DNA replication proteins [BR:
smax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJR03_03930 (ligA)
DNA repair and recombination proteins [BR:
smax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJR03_03930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJR03_03930 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJR03_03930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJR03_03930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
HHH
Motif
Other DBs
NCBI-ProteinID:
QOP40934
UniProt:
A0A7M1AU42
LinkDB
All DBs
Position
754411..756360
Genome browser
AA seq
649 aa
AA seq
DB search
MNNQEYIEAVKLLNKWAYHYYVLDDPIMTDEGYDKLYHEVLEYEENHKEEVLKDSPTQRV
GDIVSDGFTKEKHISRMWSLEDIFNEDDLDKWLTKTYKLDSRISFYCEPKYDGASLDLVY
ENGELIKGITRGDGVEGELITQNVKTIRSIPLTIEHKGLIEIRGEVVIFKDEFEKINEER
LKKGEALFANPRNAAAGSLRQLDPSITAARNLVFLPYGLGENELPEKLLHDKMEYIYSLG
FRKPPVSAVCKNKDDIQEIYKEMVANRDSYSMMLDGMVIKVDEISSQIDMGYTVKVPRWA
VAYKFPAVEKITTVKDILLQVGRTGAVTPVAVVEPTDIEGVVVERATLHNFDEITRKDIR
LGDKVIILRSGDVIPKIIKVLEHERTGNEVEVHRPTECPVCGSELLQEDVLIKCQNLECN
ARVVNSIIYFASKPCLNIDGLGNKIVEQLFNEHLVKSVLDLFSLTKEQLLELEGFKEKKA
QNLLDAIANAKGSELWRFINSLGIEHIGEVASKMIAAKFGLKFLEIHKEDLLEIDGIGEE
MAESFLEFLRVNEETIKELLEVIEPLEPELREEAHENPFKAKTVVLTGTMSESRGAIKEM
LENLGAKVSGSVSKKTDFVIYGEDAGSKYDKAVSLGVATLTEDEMREMV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaagaatatatagaagcagtaaaattattaaacaagtgggcataccattac
tatgttttagacgatcctataatgacggatgaggggtacgataagctttaccatgaagtt
ttagagtatgaagagaatcataaagaggaagttttaaaagattcccctacacaaagggtt
ggtgatatcgtaagtgacggttttacaaaagagaaacatatatctcgtatgtggtctttg
gaagatatttttaatgaagacgatttggacaaatggctgactaagacatataagcttgac
agcagaatcagcttttattgtgagccgaaatatgacggggcttcacttgatcttgtttat
gaaaacggtgaactaatcaaagggattacaagaggtgacggtgtagagggtgaactcatt
acccaaaacgtaaaaacaatccgctcgatccctttaacaatcgagcataaagggcttatt
gagatccgcggtgaggttgttatctttaaagatgagtttgagaagatcaacgaagagcgt
ctgaaaaagggtgaagcgctttttgcaaaccctagaaatgctgcagcgggaagtctgcgt
caattagatcctagtattactgctgctagaaatcttgtgtttttaccgtatggattaggg
gagaatgaacttcccgaaaaactgcttcatgacaagatggaatatatctactctttagga
tttagaaaaccgcctgtaagtgcagtttgcaaaaacaaagatgatatccaagagatatac
aaagagatggttgcaaatagagacagctactccatgatgcttgacggtatggtgataaaa
gttgatgagatctcttcacagatcgatatgggctatactgtaaaagtaccacgctgggcg
gtagcatataaattccctgcagttgagaaaatcactacggtcaaagatattttacttcaa
gtcggacgtacaggagcggtaacaccggttgcagttgttgagcctacagatatagagggg
gtagttgtagagcgtgcaacgcttcataattttgatgagatcacacgtaaagatatccgc
ttaggggataaggttattattcttcgaagcggggatgtaattcctaaaattattaaagtt
ttagagcacgagagaacgggaaatgaagtagaggtacatcgtccgacggagtgtccggtg
tgtggtagtgaactcttacaagaggatgtacttattaaatgtcaaaatctcgagtgtaat
gcaagggttgtgaactcgatcatctattttgcttcaaaaccttgtttaaatatcgacggg
cttggaaacaagatagtagaacagctctttaatgaacatttagtaaagtctgtacttgat
ctttttagtctgacaaaagagcaactcttagagcttgaagggtttaaagagaaaaaagca
caaaatcttttagatgcgatcgcaaatgcaaaaggaagcgagttgtggcgtttcattaat
tctctgggaattgagcatatcggtgaagtggcttcaaaaatgatcgcggcaaagttcggg
cttaaatttttagagattcataaagaagatcttttagagattgatggaatcggtgaagag
atggctgagagctttttagagttcttgcgtgtaaacgaagagactattaaagagttgttg
gaggtgatcgagccacttgagcctgaacttagagaagaagctcatgagaatccttttaaa
gcaaaaactgtagtactgactggaactatgagtgagtctcgcggagcgattaaagagatg
cttgaaaatctcggtgctaaagtttcaggctcggtaagtaaaaagaccgactttgtgatc
tacggcgaagatgcaggaagtaaatatgataaagctgtaagccttggagttgctactctt
actgaagatgagatgagagaaatggtttga
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