Shewanella mangrovisoli: K0H60_08145
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Entry
K0H60_08145 CDS
T09316
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smay
Shewanella mangrovisoli
Pathway
smay03030
DNA replication
smay03410
Base excision repair
smay03420
Nucleotide excision repair
smay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0H60_08145 (ligA)
03410 Base excision repair
K0H60_08145 (ligA)
03420 Nucleotide excision repair
K0H60_08145 (ligA)
03430 Mismatch repair
K0H60_08145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smay03032
]
K0H60_08145 (ligA)
03400 DNA repair and recombination proteins [BR:
smay03400
]
K0H60_08145 (ligA)
Enzymes [BR:
smay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0H60_08145 (ligA)
DNA replication proteins [BR:
smay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0H60_08145 (ligA)
DNA repair and recombination proteins [BR:
smay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0H60_08145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0H60_08145 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0H60_08145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0H60_08145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QYK10632
LinkDB
All DBs
Position
1837388..1839457
Genome browser
AA seq
689 aa
AA seq
DB search
MQDIQLDKRLSELLSQAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQQ
LKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR
VGEVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENIKTIKSIPLKLRGDNY
PELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYA
YALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVSDELSQVFAYYQDILTRRADLPF
EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVAR
LKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAI
AFPQHCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQL
IDKELVQSPADLFKLTASMMTMLDRMGMKSATNLALAIEAAKTTTLPRFLYALGIREVGE
ATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVN
WPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEA
AGSKLAKAQELGVKVIGEDELLALLAANS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgataaacgcctatctgaactgctttctcaagctgtcacgcca
cacaatgcgcagccattaatgcaggcgctctgccaatctctgaatgaacacaatattcgt
tactatgtcgatgatgcgccaagcattaccgactccgaatacgacagattaatgcagcag
ctaaaacaacttgaggccgagtatcctcagtttgttgctgccgactcgcccacccaaaga
gtgggcggtatggcactggccaagtttgagcaaattactcatcttaagcctatgttaagt
ctcgataatgccttcgatgaggcagactttagcgcgtttcataaacgtgtcagcgacaga
gttggcgaagtgagtttttgttgtgagccgaaactcgatggtttggcggtgagtattttg
tatcgcaatggtgtgcttgagcgcgccgcgactcggggtgatggtaccgtgggcgaagat
attaccgaaaacattaaaaccattaagtcgattccgctcaaactgcgcggtgacaactat
cccgaattggtcgaagtgcgcggcgaagcctttatgcccaaggcggcgtttgaggcgctg
aatgagcgtgcgcgcttaaaggatgaaaaactgttcgtaaatccgcgtaatgcggcggcg
ggcagcttacgtcagctcgacagtaaaattaccgcgtcacgggcgctgtcgttttatgcc
tacgctttaggtgtggtagagccgacgtcccacgaattagctaagacccactacgagcaa
ttgcagcaacttaaatcttgggggctgccagtcagtagcgagatcaaagtcagcgacgaa
ctcagccaagtgtttgcctactatcaagatatattgactcgccgcgccgacttaccgttt
gagatcgatggcgtggtgatgaaggttaacgatatcgcccagcagcaaaccttagggttt
gtggctaaatctccccgttgggcgattgcctataagttccccgcacaggaagaaatgacg
ctgctcgaaggcgtggattttcaggtcggccgcaccggcgcagtgactccggtggcgcgt
ctaaaacctgtgttcgttggcggcgtgacagtgtctaacgcgactttgcacaatgccgat
gaaatcgagcgtttaggtgtgatggtgggcgatactgtgattatccgccgcgccggcgat
gtgatcccgcaaattgtcgccatagtgcccgagcgccgcccggaagatgctaaggcgatt
gccttcccgcaacattgccccgtttgcggcagtttggttgagcgattagaaggtgaagcc
gtggcccgttgtagcggcggcttattctgtgaggcgcagcgtaaagaggcgatcaaacat
tttgcctcccgcaaggcattagatatcgacggcatgggcgataaaatcgtcgagcaattg
attgataaggagctggttcaaagcccggctgacttatttaaactcaccgcctcaatgatg
accatgctcgaccgtatgggaatgaagtcggccaccaatctcgcgctggcgattgaagcg
gctaaaaccacgactttgccacgtttcctctatgccttaggcattcgtgaggtgggggag
gccacggcggcgaacctggcgactcactttggtagcctagaggcgctgcgcgtggccacc
attgagcaacttattcaagttgaagatattggtgaggtggttgctcagcatgtggcgcat
ttctttgcccagccccataacctagaggtgatcgatgccttgattgcggctggcgtcaac
tggcctgcgattgcggcaccaagcgcagatgagcagccgttgaaggggcagacttgggtg
ctaacgggcaccttaaatcaactcaaccgtaacgatgctaaggcgcaattacaggccttg
ggtgccaaagtggcgggcagtgtctcgaaaaataccgattgcttagtcgcaggtgaagcg
gcgggttctaagcttgccaaagcgcaggagcttggcgttaaagtgattggtgaagatgag
ttgttagccttgttggctgcaaatagttaa
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