Streptococcus mitis: smi_1169
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Entry
smi_1169 CDS
T01173
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smb
Streptococcus mitis
Pathway
smb03030
DNA replication
smb03410
Base excision repair
smb03420
Nucleotide excision repair
smb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
smi_1169 (ligA)
03410 Base excision repair
smi_1169 (ligA)
03420 Nucleotide excision repair
smi_1169 (ligA)
03430 Mismatch repair
smi_1169 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smb03032
]
smi_1169 (ligA)
03400 DNA repair and recombination proteins [BR:
smb03400
]
smi_1169 (ligA)
Enzymes [BR:
smb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
smi_1169 (ligA)
DNA replication proteins [BR:
smb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
smi_1169 (ligA)
DNA repair and recombination proteins [BR:
smb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
smi_1169 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
smi_1169 (ligA)
MMR (mismatch excision repair)
DNA ligase
smi_1169 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
smi_1169 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
CBJ22415
UniProt:
D3H970
LinkDB
All DBs
Position
complement(1161785..1163743)
Genome browser
AA seq
652 aa
AA seq
DB search
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG
GKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVTHPTYICELKIDGLSISLTYE
KGILVAGATRGDGSVGENITENLKRVKDIPLILPEELDITVRGECYMPRASFDQVNQARQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKVLKHLEQLGFV
VNPKRILTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCDSDLLHFEDEVALRCINPRCPA
QIMEGLIHFASRDAMNITGLGPSVVEKLFSANLVKDVANIYRLQEEDFLLLEGVKEKSAS
KLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGG
VIAKSLQTYFATEGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSE
AKSKLESLGAKVTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaatgaatgagttagtcgccttgcttaatcgctatgcgactgagtactat
accagcgataatccctcggtttcagacagtgagtatgatcgcctttaccgagagttggtt
gagttagaaactgcctatccagatcaagtgctagcagacagtccgacccatcgtgttggt
ggcaaggttttagatggttttgaaaaatacagtcatcagtatcctctttatagtttgcag
gatgctttttcacgtgaggagcttgaagcttttgacgcgcgtgttcgtaaggaagtgacc
catccaacctatatttgtgagctgaaaatcgatggcttatctatctcacttacttatgaa
aaggggattttggttgctggggcaacacgtggagacggttctgttggggagaatatcacg
gaaaacctcaagcgtgttaaggacattcctttaattttgccagaagaactagatatcaca
gttcgtggggaatgttacatgccccgtgcttcttttgaccaggtcaaccaagctcgccaa
gaaaatggagagcctgaatttgccaatcctcgtaatgcggcagcaggaacactacgtcag
ctggatacagcagtagtagccaagcgcaatcttgcgactttcttatatcaagaagccagt
ccttcaactcgtgatagtcaagaaaaggttttgaagcaccttgaacaactaggttttgtg
gtcaatcctaagcgaatcttgactgaaaacatagatgaaatctgggattttatccaagaa
ataggacagaaacgggaaaacctgccttatgatatcgatggagtggtaatcaaggtcaat
gacctagcaggtcaagaagaacttggttttaccgttaaggctccaaagtgggcagtggct
tacaagttcccagctgaagaaaaagaagctcaactcttatcagttgattggacagttggc
cgtacgggtgttgtaaccccaactgcgaatctaacaccagtacaactagctggaacaact
gttagccgtgcgaccctgcacaatgtggattatattgctgaaaaggatattcgtaaagac
gacacggttatcgtctataaggctggagatatcatccctgccgttttacgtgtggtagag
tccaaacgggtttctgaagaaaaactagatattcctacaaactgtccaagttgtgactct
gatttgttgcactttgaagatgaagtggctctccgttgtatcaatccacgttgccctgct
caaatcatggaaggtttgattcactttgcttctcgtgatgccatgaatattacaggcctt
ggtccatcagtagttgagaaactcttttctgctaatctggttaaggatgtggcgaatatt
taccgattacaagaagaagatttcctccttttagagggggtcaaggaaaagtctgcttct
aaactgtatcaggccatccaagcatctaaggaaaattctgccgagaagctcttatttggt
ttgggaattcgccatgtcggaagcaaggctagtcagctcttacttcaacatttccattca
attgaaaatctggctcaggcagatccagaagaagtggctagtattgaaagtctaggtggc
gtgattgccaagagtcttcaaacttattttgcgacagaaggctctgaaattctcctaaga
gaattaaaagaagctggggtcaatctggactataaaggtcagacagtagtagcggatgcg
gccttgtcaggtttgaccgttgtattgaccggaaaattggaacgtctcaagcgctcagaa
gctaaaagtaaactcgaaagtctaggtgctaaggtaacaggcagtgtttctaaaaagacc
gacctcgtcgttgcaggcgcagatgctggaagtaaactgcaaaaagcacaagaacttggt
attgaggttcgagacgaagcttggctagaaagtctgtaa
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