Streptococcus mutans NN2025 (serotype c): SmuNN2025_0563
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Entry
SmuNN2025_0563 CDS
T01185
Symbol
dnlJ
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smc
Streptococcus mutans NN2025 (serotype c)
Pathway
smc03030
DNA replication
smc03410
Base excision repair
smc03420
Nucleotide excision repair
smc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SmuNN2025_0563 (dnlJ)
03410 Base excision repair
SmuNN2025_0563 (dnlJ)
03420 Nucleotide excision repair
SmuNN2025_0563 (dnlJ)
03430 Mismatch repair
SmuNN2025_0563 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smc03032
]
SmuNN2025_0563 (dnlJ)
03400 DNA repair and recombination proteins [BR:
smc03400
]
SmuNN2025_0563 (dnlJ)
Enzymes [BR:
smc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SmuNN2025_0563 (dnlJ)
DNA replication proteins [BR:
smc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SmuNN2025_0563 (dnlJ)
DNA repair and recombination proteins [BR:
smc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SmuNN2025_0563 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SmuNN2025_0563 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
SmuNN2025_0563 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SmuNN2025_0563 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
BAH87589
LinkDB
All DBs
Position
589295..591253
Genome browser
AA seq
652 aa
AA seq
DB search
MKERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILSNSPTHRVG
DLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIKAEFPQADYLAELKIDGLSISLTYV
NGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENIDLTVRGECYLPKASFKTINAERR
ENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTAASSQEAVLESFAKLGFT
VNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGFTVKAPRWAIA
YKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DIVVVYKAGDIIPAVLHVVENKRDQQVPLPIPTVCPSCQSELIHFEDEVALRCVNPRCPA
QLKEELIHFASRDAMNIIGLGPAIVEKLFTAELICDVADIYQLTPENLMQLEGIKEKSAT
KLYKAIQASKANSAEKLLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDGLGI
VIAESLKTYFATAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQ
AKEKLQSLGANVVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgtatgaatgagctggttcagcttcttaatcaatatgccagagaatattat
acaaaagataatcccagtgtttcagatgctgagtacgataaactctatcgtgaacttgta
gaacttgaaaaagaatttccagaggatattctttctaatagtccgacgcatcgtgtgggt
gaccttgttttagatggttttgaaaagtatagacatgagtatcctttattttctttacaa
gatgctttttctcgtgaagaattaaatgcttttgataggcgtatcaaagcagaatttccg
caggctgactatttggcagaattgaaaattgatggtctttctatttctctaacctatgtc
aatggccgtttacgagttggggctaccagaggagacgggacagttggtgaaaatatcacg
gagaaccttaagcgtgtgcgagatattccactgcatttacctgaaaatattgatttgaca
gtacgtggggaatgctatttgcctaaagcttcctttaaaactatcaatgctgagcgtagg
gaaaatggtgagactgaatttgcgaatccgcgaaatgcagcggcaggcactttgcgtcaa
ttggatactaaggttgtggctaaacgaaaattggcgacctttatctatcaagaggctggt
ccgacagctgccagcagtcaggaagcagtactagaaagttttgccaagctcggttttaca
gtcaatcctcgtcatattatttcctcctcaatggatgctatttggcagtttattgaagat
gttgctaaggaaagggctgaacttgcctatgatattgatggcgttgttatcaaagtgaac
agtttggccttacaagaggcactcggttttacagttaaagcacccagatgggccattgcc
tataaatttccagctgaagaaaaaacagcagaaattttatcggttgactggacagttggt
cgaacaggggttgtgacaccaacagctaatttaacacctgttcagctggcaggaacaacg
gtcagccgagcaaccttacacaatgttgactatattgctgaaaaggatatccgaattggt
gacatagttgttgtttataaggctggagatatcattccggcagttttacatgtcgttgaa
aacaaacgtgaccagcaagtgccgctgccaattccaacagtctgtccgtcctgtcagagt
gaactgatccattttgaggatgaggtggctcttcgctgtgttaatccacgctgtccagcc
caattaaaggaggaattgattcattttgctagtcgtgatgctatgaatattataggatta
ggtccagctattgttgaaaaattatttacagcagaactcatttgcgatgtggctgatatc
tatcagttgactcctgagaaccttatgcagctcgaagggatcaaggaaaaatcagcaact
aagctttataaggctattcaggcttccaaagccaattcagccgaaaaacttttatttgga
ttgggtattcgtcatgtcggcagtaaggcgagcagacttcttatggaacgctttgagagt
cttgagcagttagctgctgctgattttgatgatattgctgctattgatggtttgggaatt
gttattgcagagtctttaaaaacttactttgcaacagcaggcgcacagaaacttttgata
gagttaaaaacagcaggtttgaacttgacttatcttggcaaaaaaacagcaagtgatgct
gctttaactgggatgacaattgttttaactggtaaactagcaaacttgacccgcagccaa
gctaaagaaaaactacaaagtcttggtgctaatgtagttggaagtgtttctaaaaaaacc
agtctggtcatagcggggagtgatgcaggttctaaattagaaaaggctaaaactttagga
attgaaattaaggatgaagcttggctagaaagtttgtga
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